View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_high_32 (Length: 220)
Name: NF5240_high_32
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_32 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30278700 - 30278481
Alignment:
| Q |
1 |
ccgcgcttaactccaacctttgttccagtgatcgatcgggttgtaaattacggttgaaattatattggacatattatagaatattacatataaaaacaac |
100 |
Q |
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| T |
30278700 |
ccgcgcttaactccaacctttgttccagtgatcgaccgggttgtaaattacggttgaaattatattggaaatattatagaatattacatataaagacagc |
30278601 |
T |
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| Q |
101 |
tacgtaatttgaatgatcaacattaattaaagacaaaaataaatgaaattgatactcaatatacttaagtctcttaacatatatttaatgaaattaatta |
200 |
Q |
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| T |
30278600 |
tacgtaatttgaatgatcatcatcaattaaagacaaaaataaatgaaattgatcctcaatatacttaagtttcttaacatatatttaatgaaattaatta |
30278501 |
T |
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| Q |
201 |
gaggcaaatttatttattta |
220 |
Q |
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|||||||||||||||||||| |
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| T |
30278500 |
gaggcaaatttatttattta |
30278481 |
T |
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