View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_high_5 (Length: 392)
Name: NF5240_high_5
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 41692951 - 41693245
Alignment:
| Q |
13 |
aaaattgaaatgtggcaaaaatatcgtaataaatagtgtcttttgcaccctagtaagtaaactactactaatacaaacaatatagacttcagtagttttc |
112 |
Q |
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| T |
41692951 |
aaaattgaaatgtggcaaaaatatcgtaataaatagtcttttgcgcaccctagtaagtaaactactactaatacaaacaatatagacttcagtagttttc |
41693050 |
T |
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| Q |
113 |
aaaaattcacgtgattcttttttgtcccttttcattttcatctcaatcaatcaaaatagtctctttgaagacttttctcatccaacaaagtgttaaggaa |
212 |
Q |
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| T |
41693051 |
aaaaattcacgtgattcttttttgtcccttttcattttcatctcaatcaatcaaaatagactctttcaagacttttctcatccaacaaagtgttaaggaa |
41693150 |
T |
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| Q |
213 |
caatttagagaaccgaagaaaattctttgaaagaggaagagagaaagtttccggtgaataaccggccacatgatcaattaaagtatcaccgtgta |
307 |
Q |
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| T |
41693151 |
caatttagagaaccgaagaaaattctttgaaagaggaagagagaaagtttccggtgaataaccggccacatgatcaattaaagtatcaccgtgta |
41693245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 33077653 - 33077617
Alignment:
| Q |
339 |
caatccaatgtaaactgcaataatcgaaccgaaaaac |
375 |
Q |
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| T |
33077653 |
caatccaatgtaaactgcaataaccgaaccgaaaaac |
33077617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 31185799 - 31185851
Alignment:
| Q |
323 |
gtgttcatctccaattcaatccaatgtaaactgcaataatcgaaccgaaaaac |
375 |
Q |
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| T |
31185799 |
gtgttcatgtccaatccaatccaatgtaaactgcaaaaatcgaaccgaaaaac |
31185851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 43192295 - 43192244
Alignment:
| Q |
323 |
gtgttcatctccaattcaatccaatgtaaactgcaataatcgaaccgaaaaa |
374 |
Q |
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| T |
43192295 |
gtgttcatgtccaatttaatccaatgtaaaccgcaataatcgaaccgaaaaa |
43192244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 41424079 - 41424131
Alignment:
| Q |
323 |
gtgttcatctccaattcaatccaatgtaaactgcaataatcgaaccgaaaaac |
375 |
Q |
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| T |
41424079 |
gtgttcatgtccaatccaatccaatgcaaactgcaataaccgaaccaaaaaac |
41424131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 34175646 - 34175699
Alignment:
| Q |
323 |
gtgttcatctccaattcaatccaatgtaaactgcaataatcgaaccgaaaaact |
376 |
Q |
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|||||||| | |||| |||||||| | |||| |||||||||||||||||||||| |
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| T |
34175646 |
gtgttcatgttcaatccaatccaaagcaaaccgcaataatcgaaccgaaaaact |
34175699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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