View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5240_high_7 (Length: 384)
Name: NF5240_high_7
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 3014757 - 3014402
Alignment:
| Q |
11 |
cacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgtgacaaagaaacattgaactataataataactagtggaaaaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3014757 |
cacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgcgacgaagaaacattgaactataataataactagttgaaaaaa |
3014658 |
T |
|
| Q |
111 |
ggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcacc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014657 |
ggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcacc |
3014558 |
T |
|
| Q |
211 |
actgaaatatgaaatacaaaaacatgaatagaaagaattaagcagatattacgcaacaacatcgctataatacatacaaatcaacataccttgtagcact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
3014557 |
gctgaaatatgaaatacaaaaacatgaatagaaagaattaagcagatattacgcgacaacaacgctgtaaaacatacaaatcaacataccttatagcact |
3014458 |
T |
|
| Q |
311 |
tgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014457 |
tgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagt |
3014402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 183119 - 183042
Alignment:
| Q |
161 |
ttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaa |
238 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
183119 |
ttttgggtccactgaaacaatagaaataacatgtctgggattccttcaccattgaaatatcaaatactaaaacatgaa |
183042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 591250 - 591338
Alignment:
| Q |
152 |
atcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||| |||| |
|
|
| T |
591250 |
atcatggtcttttgggtccaaccaaacaatagaaataacatgtccgtgattccttcaccactgaaatatcaaatactagaacatcaata |
591338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 40672025 - 40672172
Alignment:
| Q |
79 |
cattgaactataataataactagtggaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaac |
178 |
Q |
| |
|
||||||| |||||||||| | | | ||||| |||||||||||||| || ||| |||||||||| ||| |||| ||||| | ||| ||||||||||| |
|
|
| T |
40672025 |
cattgaataataataataagtggggaaaaaagggctaacctgcacagcttgttgactgtaggtaaacttgtgaataatggtgtattggatccacttaaac |
40672124 |
T |
|
| Q |
179 |
aatagaaataacatgtccgggattccttcaccactgaaatatgaaata |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40672125 |
aatagaaataacatatccgggattccttcaccactgaaatatgaaata |
40672172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 40672231 - 40672265
Alignment:
| Q |
306 |
gcacttgtgggcacaatgctgaatgtttgtcctcc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672231 |
gcacttgtgggcacaatgctgaatgtttgtcctcc |
40672265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44606488 - 44606401
Alignment:
| Q |
153 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
44606488 |
tcatggtcttttgggtccacttaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44606401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44627979 - 44627892
Alignment:
| Q |
153 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
| |
|
||||||| ||||| ||||||| || ||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
44627979 |
tcatggtcttttgggtccactgaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44627892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University