View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_10 (Length: 357)
Name: NF5240_low_10
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3807979 - 3808318
Alignment:
| Q |
1 |
tggttaggtccatgtgaaaggaacccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaaggtatcca |
100 |
Q |
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| T |
3807979 |
tggttaggtccatgtgaaaggtacccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaaggtatcta |
3808078 |
T |
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| Q |
101 |
tgttgactattgagttattggataagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgagataaggtagatcaacttaataagtttt |
200 |
Q |
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| T |
3808079 |
tgttgactattgaattatttgataagcttccaacattgcattgcccagctgttgatgaggttgtgtgattgtgataaggtagatcaacttaataagtttt |
3808178 |
T |
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| Q |
201 |
tattctaagttttggtacaatcaacttaataagttttattcctggtcgttttgaacttggttaatttcatttgttccccttttctttggttaaaactaag |
300 |
Q |
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| T |
3808179 |
tattctaagttttggtacaatcaacttaataagttttattcctgatcgttttgaacttggttaatttcatttgttccccttttctttggttagaactaag |
3808278 |
T |
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| Q |
301 |
tagtgagtgacttgcatatgtcacaccccacatactttgt |
340 |
Q |
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| T |
3808279 |
tagtgagtgacttgcatatgtcacaccccacatactttgt |
3808318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3776273 - 3776419
Alignment:
| Q |
1 |
tggttaggtccatgtgaaaggaacccttcaacaaagtctccactttctattggatcattttctgagaggatcataacaaagcaaaaatcaaaggtatcca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||| | || ||| |||||||||||| |||||||||| ||||||||||| ||| | |
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| T |
3776273 |
tggttaggtccatgtgaaaggaacacttcaacaa---ctcctcttccaatgggaaa---ttctgagaggataataacaaagccaaaatcaaaggcatcta |
3776366 |
T |
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| Q |
101 |
tgttgactattgagttattggataagcttccaacattgcattgcccagctgtt |
153 |
Q |
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| T |
3776367 |
tgttgactattgatttattagagaagcttccaacattgcattgcactgctgtt |
3776419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 3776491 - 3776572
Alignment:
| Q |
258 |
tggttaatttcatttgttccccttttcttt--ggttaaaactaagtagtgagtgacttgcatatgtcacaccccacatactt |
337 |
Q |
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||||||||||| |||||||| ||||| ||| |||||||| |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
3776491 |
tggttaatttcttttgttcctcttttttttttggttaaaattaaggagtgagtgacttgcaaatgtcacaccccacatactt |
3776572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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