View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_11 (Length: 342)
Name: NF5240_low_11
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 2145961 - 2146275
Alignment:
| Q |
19 |
ggttgaccggatttatctttaactggaaccttagcagatccaatctcatgacacgatggactccataaattaccaagaagtgattgtaacgcatacatga |
118 |
Q |
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| T |
2145961 |
ggttgaccggatttatctttaactggaaccttagcagatccaatctcatgacacgatggactccacaaattaccaagaagtgattgtaacgcatacatga |
2146060 |
T |
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| Q |
119 |
tcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgcatttttagtacaattgagaaatgttacgttttc |
218 |
Q |
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| T |
2146061 |
tcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgcatttttagtacaattgagaaatgttacgttttc |
2146160 |
T |
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| Q |
219 |
ataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttcttggtggacaatcattgggatca |
318 |
Q |
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| T |
2146161 |
ataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttcttggtggacaatcattgggatca |
2146260 |
T |
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| Q |
319 |
tccatccatattctt |
333 |
Q |
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| T |
2146261 |
tccatccatattctt |
2146275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 2141836 - 2142147
Alignment:
| Q |
23 |
gaccggatttatctttaactggaaccttagcagatccaatctcatgacacgatggactccataaattaccaagaagtgattgtaacgcatacatgatcaa |
122 |
Q |
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| T |
2141836 |
gaccggatttatttatgaccggaaccttagctgatcgaatctcatgacacgatggactccacaaattactaagaggtgattgtaacgtatacatgatcga |
2141935 |
T |
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| Q |
123 |
atagttgtcattgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgc---atttttagtacaattgagaaatgttacgttttc- |
218 |
Q |
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| T |
2141936 |
atacttgtcattgcttagacaaggta---tattaggaagatcatcaaacattggtccgtttgcaaaattggtagtacagttgagaaatgttacgttttca |
2142032 |
T |
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| Q |
219 |
--ataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttcttggtggacaatcattgggat |
316 |
Q |
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| T |
2142033 |
taataatgagtactatgatcaaatctgtcccattggaaaggtgaatcattgttgaggtctatg--ttcaaggaaccgtcttggtgaacaaccattaggat |
2142130 |
T |
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| Q |
317 |
catccatccatattctt |
333 |
Q |
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|||||| ||| |||||| |
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| T |
2142131 |
catccaaccaaattctt |
2142147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 317
Target Start/End: Original strand, 2151483 - 2151669
Alignment:
| Q |
134 |
tgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgca---tttttagtacaattgagaaatgttacgttttcataatgagtact |
230 |
Q |
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|||||||||||||||||||| ||||||| |||||| |||||||||| || || || ||||||||||||||| |||||||||||||||| | | |
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| T |
2151483 |
tgcttagacaaggtatatta---ggaagatcatcaaa---tggttccttttcaacattgttggtacaattgagaaatattacgttttcataatggtcatt |
2151576 |
T |
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| Q |
231 |
atgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtct------atgttttgaaggaaccttcttggtggacaatcattgggatc |
317 |
Q |
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| |||| ||||| ||||||| |||||||||||| || |||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
2151577 |
ttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgtctatgttttgaatgaaccttcttggtggacaatcattgagatc |
2151669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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