View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5240_low_12 (Length: 334)

Name: NF5240_low_12
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5240_low_12
NF5240_low_12
[»] chr1 (11 HSPs)
chr1 (1-326)||(11026377-11026702)
chr1 (1-326)||(10992921-10993246)
chr1 (1-308)||(10930717-10931024)
chr1 (1-326)||(10906836-10907158)
chr1 (1-326)||(11041080-11041405)
chr1 (98-201)||(9377981-9378084)
chr1 (80-204)||(9236146-9236270)
chr1 (119-201)||(9495562-9495644)
chr1 (92-186)||(9337795-9337889)
chr1 (92-186)||(9364654-9364748)
chr1 (92-165)||(9257286-9257359)
[»] chr6 (3 HSPs)
chr6 (165-206)||(31145387-31145428)
chr6 (165-206)||(31171700-31171741)
chr6 (165-206)||(31189445-31189486)
[»] chr4 (1 HSPs)
chr4 (86-222)||(27696284-27696420)
[»] chr3 (1 HSPs)
chr3 (89-141)||(9171757-9171809)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 11026377 - 11026702
Alignment:
Q  1 acaaaatgtgttacttgaccataacattattccaaaaatatctgactatgatctagctaaagtatgttcaagggatcagagcatagtgtcaatgactgca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  11026377 acaaaatgtgttacttgaccataactttattccaaaaatatctgactttggtctagctaaattatgttcaagggatcagagcatagtatcaatgactgca 11026476  T
Q  101 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11026477 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 11026576  T
Q  201 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11026577 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatgaaga 11026676  T
Q  301 ggaaatgaaaattcatattgatgatg 326  Q
    ||||||||||||||||||||||||||    
T  11026677 ggaaatgaaaattcatattgatgatg 11026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 10992921 - 10993246
Alignment:
Q  1 acaaaatgtgttacttgaccataacattattccaaaaatatctgactatgatctagctaaagtatgttcaagggatcagagcatagtgtcaatgactgca 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||| ||||||||||||| || ||| |||| |||||||| |||    
T  10992921 acaaaatgtgttacttgaccataacttcattccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaagcgtagtttcaatgaccgca 10993020  T
Q  101 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10993021 gctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgc 10993120  T
Q  201 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaaga 300  Q
    |||||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  10993121 ttgaaacaataggagggaagaaaatcacagaggatttagaggaaaacagtagtcatgtttactatccggaatggatttataaacttatagatgatgaaga 10993220  T
Q  301 ggaaatgaaaattcatattgatgatg 326  Q
    |||||||| ||||||| |||| ||||    
T  10993221 ggaaatgagaattcatgttgacgatg 10993246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 10930717 - 10931024
Alignment:
Q  1 acaaaatgtgttacttgaccataacattattccaaaaatatctgactatgatctagctaaagtatgttcaagggatcagagcatagtgtcaatgactgca 100  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||| ||||||||||||| || ||||||||||||||||| |||    
T  10930717 acaaaatgtgttacttgaccataactttattccaaagatatctgactttggtctagctaaattatgttcaagggaccaaagcatagtgtcaatgacagca 10930816  T
Q  101 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 200  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10930817 gctagaggaactttgggctacattgctccagaagttttctcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgc 10930916  T
Q  201 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaaga 300  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10930917 ttgaaacaataggagggaagaagataacagaggacttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatcaaga 10931016  T
Q  301 ggaaatga 308  Q
    ||||||||    
T  10931017 ggaaatga 10931024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 10906836 - 10907158
Alignment:
Q  1 acaaaatgtgttacttgaccataacattattccaaaaatatctgactatgatctagctaaagtatgttcaagggatcagagcatagtgtcaatgactgca 100  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||| || |||||||||| ||||||||||||| || ||| |||| |||||||| |||    
T  10906836 acaaaatgtgttacttgaccataacttt--tccaaaaatatctgactttggtctagctaaattatgttcaagggaccaaagcgtagtttcaatgaccgca 10906933  T
Q  101 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10906934 gctagaggaacattggggtacattgctccagaagttttttcaaggaactttggaaatgtgtcttacaaatcagatgtttatagttatggaatgatgttgc 10907033  T
Q  201 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaaga 300  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  10907034 ttgaaacaataggagggaagaagataacagaggacttagaggaaaacagtag-catgtttactatccggagtggattgataatcttatagatgatcaaga 10907132  T
Q  301 ggaaatgaaaattcatattgatgatg 326  Q
     ||||||| ||||||| |||||||||    
T  10907133 cgaaatgagaattcatgttgatgatg 10907158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 11041080 - 11041405
Alignment:
Q  1 acaaaatgtgttacttgaccataacattattccaaaaatatctgactatgatctagctaaagtatgttcaagggatcagagcatagtgtcaatgactgca 100  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||| | || |||||||||| |||||||||||||||||||||||||||||||||| ||     
T  11041080 acaaaatgtgttacttgaccacaactttattccaaaaatatgtgattttggtctagctaaattatgttcaagggatcagagcatagtgtcaatgaccgcg 11041179  T
Q  101 gctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgc 200  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||| |||||||||||||||||||    
T  11041180 gctagaggaactttgggctacattgctccagaagttttttcaaggaactttggaaacgtgtctttcaaatcggatgtttatagttatggaatgatgttgc 11041279  T
Q  201 ttgaaacaataggaggaaggaagatcacagaggacttagaggaaaacagtagtcatgtttactatccggaatggatttataatcttatagatgatcaaga 300  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  11041280 ttgaaacgataggagggaagaagatcacagaggatttagaggaaaacagtagtcatgtttactatccggagtggatttataatcttatagatgatgaaga 11041379  T
Q  301 ggaaatgaaaattcatattgatgatg 326  Q
    |||||||| ||||||| |||||||||    
T  11041380 ggaaatgagaattcatgttgatgatg 11041405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 9377981 - 9378084
Alignment:
Q  98 gcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgt 197  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| || ||| |||| || || |||||  |||    
T  9377981 gcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgt 9378080  T
Q  198 tgct 201  Q
    ||||    
T  9378081 tgct 9378084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 9236270 - 9236146
Alignment:
Q  80 agcatagtgtcaatgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgttt 179  Q
    |||| |||||| ||||||||||| |||||||| ||||| |||||||| || |||||||| || || |||||||||||||| ||||| || || ||| |||    
T  9236270 agcacagtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatattt 9236171  T
Q  180 acagttatggaatgatgttgcttga 204  Q
    | || || || ||| ||||||||||    
T  9236170 atagctacggtatgttgttgcttga 9236146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 9495562 - 9495644
Alignment:
Q  119 tacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagttatggaatgatgttgct 201  Q
    ||||| || ||||||||||| || |||||||| ||||||||||| ||||| || |||||||| |||| ||||||| |||||||    
T  9495562 tacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagttttggaatgttgttgct 9495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 9337795 - 9337889
Alignment:
Q  92 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtta 186  Q
    |||||||||||||  |||||||| || ||||| || || |||||||||||||| ||||| || ||||| ||||| || || ||| | ||||||||    
T  9337795 atgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagtta 9337889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 9364654 - 9364748
Alignment:
Q  92 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtta 186  Q
    |||||||||||||  |||||||| || ||||| || || |||||||||||||| ||||| || ||||| ||||| || || ||| | ||||||||    
T  9364654 atgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagtta 9364748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 9257359 - 9257286
Alignment:
Q  92 atgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtctta 165  Q
    ||||||||||| ||||||||||| || ||||| || || ||||||||||| || ||||| || ||||| |||||    
T  9257359 atgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaaactttggtaatgtctctta 9257286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 31145428 - 31145387
Alignment:
Q  165 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 206  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31145428 acaaatctgatgtttatagttatggaatgatgttgctagaaa 31145387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 31171741 - 31171700
Alignment:
Q  165 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 206  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31171741 acaaatctgatgtttatagttatggaatgatgttgctagaaa 31171700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 31189486 - 31189445
Alignment:
Q  165 acaaatcagatgtttacagttatggaatgatgttgcttgaaa 206  Q
    ||||||| |||||||| |||||||||||||||||||| ||||    
T  31189486 acaaatctgatgtttatagttatggaatgatgttgctggaaa 31189445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 27696284 - 27696420
Alignment:
Q  86 gtgtcaatgactgcagctagaggaacattggggtacattgctccagaagttttttcaaggaacttcggaaatgtgtcttacaaatcagatgtttacagtt 185  Q
    |||||||||||  | ||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| || | ||| || || || ||||||||||| ||||    
T  27696284 gtgtcaatgaccacggctaggggaactttgggctacattgcgccagaggtattttctagaaactttggcattgtatcctataagtcagatgtttatagtt 27696383  T
Q  186 atggaatgatgttgcttgaaacaataggaggaaggaa 222  Q
    |||| ||| || | |||||||   | |||||||||||    
T  27696384 atgggatgctgcttcttgaaatggttggaggaaggaa 27696420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 9171757 - 9171809
Alignment:
Q  89 tcaatgactgcagctagaggaacattggggtacattgctccagaagttttttc 141  Q
    |||||||||||||| ||||||||||| || ||||| || || |||||||||||    
T  9171757 tcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttc 9171809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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