View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_15 (Length: 299)
Name: NF5240_low_15
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 11108526 - 11108799
Alignment:
| Q |
9 |
tgctcatgatggatcctggctcatgaaggagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcattg |
108 |
Q |
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| T |
11108526 |
tgctcatgatgggtcctggctcatgaaggagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcattg |
11108625 |
T |
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| Q |
109 |
-ttgattcaaaacatcttttttggttgactgaccaccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctat |
207 |
Q |
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| T |
11108626 |
gttgattcaaaacatcttttttggttgactgaccaccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctat |
11108725 |
T |
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| Q |
208 |
gaataatgacgacgacattgaaattcaatctttcatggacttgatgatgaatagtaatggagatgagtcagtgc |
281 |
Q |
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| T |
11108726 |
gaataatgacgacgacattgaaattcaatctttcatgggcttgatgatgaatagtaatggagatgagtcagtgc |
11108799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 11247906 - 11247768
Alignment:
| Q |
141 |
caccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatgacgacgacattgaaattcaatcttt |
240 |
Q |
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| T |
11247906 |
caccaccattgacatccaggaacgaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaactttt |
11247807 |
T |
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| Q |
241 |
catggacttgatgatgaatagtaatggagatgagtcagt |
279 |
Q |
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| T |
11247806 |
gatgggcttgatgatgaatggtaatggagatgagacagt |
11247768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 9895010 - 9894919
Alignment:
| Q |
52 |
atgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcatt-gttgattcaaaacatcttttttggttgactgacca |
142 |
Q |
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| T |
9895010 |
atgctcatgtttcaatgtctttgtgaaggcaaattaatgcagaataatatctccttggttgattcaaaacatctttgttggttgattgacca |
9894919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 11248087 - 11247981
Alignment:
| Q |
37 |
gagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcatt-gttgattcaaaacatcttttttggttga |
135 |
Q |
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| T |
11248087 |
gagaaagagatggcaatgctgatgtttcaatatctttatgaaggtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttga |
11247988 |
T |
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| Q |
136 |
ctgacca |
142 |
Q |
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| T |
11247987 |
ttgacca |
11247981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 11100172 - 11100225
Alignment:
| Q |
163 |
tgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatga |
216 |
Q |
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| T |
11100172 |
tgaagaaatggcaattatgggtgatggccatgttgggatacctattaataatga |
11100225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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