View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_19 (Length: 260)
Name: NF5240_low_19
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6475823 - 6475986
Alignment:
| Q |
1 |
caactaacacgactagtagtaagtaagtaactatagttaagttaactaaccattgattacaaaatgccagttgtagaaaacatggagcattcattcaatc |
100 |
Q |
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| T |
6475823 |
caactaacaagactagtagtaagtaagtaactatagttaagttaactaaccat-gattacaaaatgccagttgtagaaaacatggagcattcattcaatc |
6475921 |
T |
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| Q |
101 |
taccgcaaaataatgcaatacaaacgtaacatcaaaacccaaaaccaaaaccgaaattcacattt |
165 |
Q |
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| T |
6475922 |
taccgcaaaataatgcaatacaaacgtaacatcaaaacccaaaaccaaaaccgaaattcacattt |
6475986 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 6476004 - 6476057
Alignment:
| Q |
189 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcac |
242 |
Q |
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| T |
6476004 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcac |
6476057 |
T |
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