View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_2 (Length: 729)
Name: NF5240_low_2
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 43 - 712
Target Start/End: Complemental strand, 43762677 - 43762008
Alignment:
| Q |
43 |
tattccttcctcacagtctctgcagagcagaatcttacctgtaaaagaaaatgaaaatggagcagccatgtcacacagtgctgaaaatgatcttttgatt |
142 |
Q |
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| T |
43762677 |
tattccttcctcacagtctctgcagagcagaatcttacctgtaaaagaaaatgaaaatggagcagccatgtcaaacagtgctgaaaatgatcttttgatt |
43762578 |
T |
|
| Q |
143 |
ttgtttcacttcaaaatgtgagtcaacaatcttatgcccaaacaggagttataaggtgaatgagttggtttgggggagaaaaataagattggagtgatat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43762577 |
ttgtttcacttcaaaatgtgagtcaacaatcttatgcccaaacaggagttataaggtgaatgagttggtttgggggagaaaaataagattggagtgatat |
43762478 |
T |
|
| Q |
243 |
aaggtcagtgttcaactccacccactaatataaacataaactagggatataaagttaacttggtggttcgagtgagagagttaaggatctccagggtatg |
342 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43762477 |
aaggttagtgttcaactccacccactaatataaacataaactagggatataaagttaacttggtggttcgagtgagagagttaaggatctcgagggtatg |
43762378 |
T |
|
| Q |
343 |
atccccacccctagcataatatatactaagaatacatacaacacattactatgtctaaggttggcatgttctgttaaataaaaaagttacgtctaatgca |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43762377 |
atccccacccctagcataatatatactaagaatacatacaacacattactatgtcaaaggttggcatgttctgttaaataaaaaagctacgtctaatgca |
43762278 |
T |
|
| Q |
443 |
gtaatactacataagcaaaaatgtaagatgttcttctaatcgacttactggtcacaatttaaaattataaatatgcttgccatcccaaagaaaagaagaa |
542 |
Q |
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| T |
43762277 |
gtaatactacataagcaaaaatgtaagatgttcttctaatcgacttactggtcacaatttaaaattataaatatgcttgccatcccaaagaaaagaagaa |
43762178 |
T |
|
| Q |
543 |
ctcatggatagaatcattgtctagcacacctgatgattatggcatggaaccacctgatcttaaaagggaggttctaagacttgaacctcaaattcacaag |
642 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43762177 |
ctcgtggatagaatcattgtctagcacacctgatgattatggtatggaaccacctgatcttaaaagggaggttctaagacttgaacctcaaattcacaag |
43762078 |
T |
|
| Q |
643 |
gtcaatggcatggttggctaccaacatcagggttacccccacagtgggcaattacctcctacttctctct |
712 |
Q |
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| T |
43762077 |
gtcaatggcatggttggctaccaacatcagggttacccccacagtgggcaattacctcctacttctctct |
43762008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 13875342 - 13875377
Alignment:
| Q |
21 |
gtgatcaacacagacatcaatctattccttcctcac |
56 |
Q |
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| T |
13875342 |
gtgatcaacacagacatcaatctcttccttcctcac |
13875377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 13879559 - 13879594
Alignment:
| Q |
21 |
gtgatcaacacagacatcaatctattccttcctcac |
56 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
13879559 |
gtgatcaacacagacatcaatctcttccttcctcac |
13879594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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