View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_28 (Length: 230)
Name: NF5240_low_28
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 15873603 - 15873793
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
15873603 |
tcgaaaaaaataaggtgtgacgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccac |
15873702 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaattaatttcttcct |
200 |
Q |
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| T |
15873703 |
tcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcct |
15873793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 15921494 - 15921290
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
15921494 |
tcgaaaaaaataaggtgtgacgtcattaaacaaaaacataggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccac |
15921395 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgt |
209 |
Q |
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| T |
15921394 |
tcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgt |
15921295 |
T |
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| Q |
210 |
cttct |
214 |
Q |
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| T |
15921294 |
cttct |
15921290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 15900406 - 15900258
Alignment:
| Q |
48 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
147 |
Q |
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| T |
15900406 |
taggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgt |
15900307 |
T |
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| Q |
148 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttct |
196 |
Q |
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| T |
15900306 |
ttttagatcccgtatgctcttataagtattccaattgaaatcaatttct |
15900258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 14060016 - 14060189
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
14060016 |
tcgaaaaaaataaggtgtgacatcattgaacaaaaaaataggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccat |
14060115 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaatt |
183 |
Q |
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| T |
14060116 |
gcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 14048645 - 14048815
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
14048645 |
tcgaaaaaaataaggcgtgacatcattgaacaaaaaaataggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccat |
14048744 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattcca |
180 |
Q |
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| T |
14048745 |
gcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttatgcttttataagtattcca |
14048815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 15880450 - 15880511
Alignment:
| Q |
48 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
15880450 |
taggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
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