View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_29 (Length: 230)
Name: NF5240_low_29
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_29 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 13879376 - 13879603
Alignment:
| Q |
3 |
gacatcatcatcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaaca |
102 |
Q |
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| T |
13879376 |
gacatcatcatcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaaca |
13879475 |
T |
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| Q |
103 |
aagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacat |
202 |
Q |
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| T |
13879476 |
aagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacat |
13879575 |
T |
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| Q |
203 |
caacctcttccttcctcacgttgtcagc |
230 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
13879576 |
caatctcttccttcctcacgttgtcagc |
13879603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 13875167 - 13875382
Alignment:
| Q |
11 |
catcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgca |
110 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
13875167 |
catcatcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaa |
13875266 |
T |
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| Q |
111 |
gtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaacctct |
210 |
Q |
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| T |
13875267 |
atgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctct |
13875366 |
T |
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| Q |
211 |
tccttcctcacgttgt |
226 |
Q |
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| T |
13875367 |
tccttcctcacgttgt |
13875382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 4879 - 4851
Alignment:
| Q |
7 |
tcatcatcttcatcttcatcttcttcctt |
35 |
Q |
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| T |
4879 |
tcatcatcttcatcttcatcttcttcctt |
4851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 42827129 - 42827157
Alignment:
| Q |
7 |
tcatcatcttcatcttcatcttcttcctt |
35 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42827129 |
tcatcatcttcatcttcatcttcttcctt |
42827157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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