View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_3 (Length: 655)
Name: NF5240_low_3
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 502
Target Start/End: Original strand, 46721303 - 46721801
Alignment:
| Q |
13 |
gagagaagagtgaagcgtgaatgctaagtcaat----gatagagggatagccgt---aagtagtgtgtgcgtgatttttaagtaaactcagaaacctaat |
105 |
Q |
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| T |
46721303 |
gagagaagagtgaagcgtgaatgctaagtcaatcaatgatagagggatagccgttataagtagtgtgtgcgtgatttttaagtaaactcagaaacctaat |
46721402 |
T |
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| Q |
106 |
aagataatcgatcttaagtcgtgcatgcatgcgtg--ttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcttgcgttattt |
203 |
Q |
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| T |
46721403 |
aagataatcgatattaagtcgtgcatgcatgcatgcgttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcctgcgttattt |
46721502 |
T |
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| Q |
204 |
caaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatgg |
303 |
Q |
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| T |
46721503 |
caaagtccacacacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatgg |
46721602 |
T |
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| Q |
304 |
taattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgcttcattgtatttgtatattcatatacatatataaatataatgc |
403 |
Q |
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| T |
46721603 |
taattaagcaaattaacttctcgattcatgtttctttttcactctaaccttcattgcttcattgtatttgtatattcatatacatatataaatataatgc |
46721702 |
T |
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| Q |
404 |
tttttggtttttcctgtttctatacaggctctccctcagcagcaaattgttaactatcccactttcaagcttgtccttgtaggtgatggaggaaccggt |
502 |
Q |
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| T |
46721703 |
tttttggtttttcctgtttctatacaggctctccctcagcagcaaattgttaactatcccactttcaagcttgtccttgtaggtgatggaggaaccggt |
46721801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 494 - 636
Target Start/End: Original strand, 46722946 - 46723086
Alignment:
| Q |
494 |
ggaaccggtactacttttcgatctttctttcttccacttaattttgattcaaaattacacacatacacacttcatattaattatgtatgatattgttatt |
593 |
Q |
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| T |
46722946 |
ggaaccggtactacttttcgatctttctttcttccacttaattctgattcaaaattacacaca--cacacttcatattaattatatatgatattgttatt |
46723043 |
T |
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| Q |
594 |
tgtttgtggctgcaggaaaaaccacttttgttaaaaggcatct |
636 |
Q |
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| T |
46723044 |
tgtttgtggctgcaggaaaaaccacttttgttaaaaggcatct |
46723086 |
T |
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