View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_31 (Length: 221)
Name: NF5240_low_31
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 26131353 - 26131568
Alignment:
| Q |
6 |
aacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcac |
105 |
Q |
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| T |
26131353 |
aacacaacaagcgggcaattgtacttgtttttccgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcac |
26131452 |
T |
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| Q |
106 |
accataacaaacactccaggctcctatcattgtcaaaacagtgtctcacaaacatacgagggtctttggggcaaagatctcgaagatactcaactgcacc |
205 |
Q |
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| T |
26131453 |
accataacaaacactccagcctcctatcattgtcaaaacagtgtctcacaaacatacgagggtctttggtgcaaagatctcgaagatacttaactgcacc |
26131552 |
T |
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| Q |
206 |
acatgcagcggaaaac |
221 |
Q |
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| T |
26131553 |
acatgcatcggaaaac |
26131568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 35242140 - 35242340
Alignment:
| Q |
6 |
aacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcac |
105 |
Q |
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| T |
35242140 |
aacacaacaaacggacaattgtacttgttcttccgataagttgcatcgaaggccaaaacatctccaaatatctcataattcatacgactttcaccgtcac |
35242239 |
T |
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| Q |
106 |
accataacaaacactccaggctcctatcattgtcaaaacagtgtctcacaaacatacgagggtctttggggcaaagatctcgaagatactcaactgcacc |
205 |
Q |
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| T |
35242240 |
accagaacagacgctcaaggctcctatcatcatcaatacaacttttcacaaacataagaggatcgtttgtgcaaagatctcgaagatagttaactgcacc |
35242339 |
T |
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| Q |
206 |
a |
206 |
Q |
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| T |
35242340 |
a |
35242340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 11010216 - 11010016
Alignment:
| Q |
6 |
aacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttcaccgtcac |
105 |
Q |
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|||||||||||| | |||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11010216 |
aacacaacaaacagacaattgtacttgttcttccgataagttgcatcaaaggccaaaacatctccaaatatctcataattcatacgactttcaccgtcac |
11010117 |
T |
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| Q |
106 |
accataacaaacactccaggctcctatcattgtcaaaacagtgtctcacaaacatacgagggtctttggggcaaagatctcgaagatactcaactgcacc |
205 |
Q |
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|||| |||| || ||| || |||||||||| ||||| |||| | |||||||||| |||| || | | |||||||||||||||||||| |||| |||| |
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| T |
11010116 |
accagaacagacgctcaagcctcctatcatcgtcaatacagcttttcacaaacattagaggatcgtctgtgcaaagatctcgaagatacttaacttcacc |
11010017 |
T |
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| Q |
206 |
a |
206 |
Q |
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| T |
11010016 |
a |
11010016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 21427977 - 21427891
Alignment:
| Q |
11 |
aacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatacgactttc |
97 |
Q |
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||||||||| ||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
21427977 |
aacaaacggacaattatacttgttttttcgatacgttacatcaaaggcaatgacatctccaaatatctcatagttcatttgactttc |
21427891 |
T |
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