View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_8 (Length: 383)
Name: NF5240_low_8
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 6475779 - 6475393
Alignment:
| Q |
1 |
tttgtcttactcgatgtaaaatctgaatttatatacttttggattttagaagaaacaaaaccattaaaaagtctttgattgaaatagtgtagtttgcttg |
100 |
Q |
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| T |
6475779 |
tttgtcttactcggtgtaaaatctgaatttatatacttttggattttagaagaaacaaaaccaataaaaagtctttgattgaaatagtgcagtttgcttg |
6475680 |
T |
|
| Q |
101 |
tcaannnnnnnnnnnnatcattacaaactagctacttttta---tacataaaagtttaggtgagttaagtcacgctgacgttaaaggtagatctcaaagt |
197 |
Q |
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|||| |||||||||||||||||| |||| | ||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||| |
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| T |
6475679 |
tcaattttttgtttttatcattacaaactagctatttttaaaaatacataaaagtttaggtgagttaagctacgctagcgttaaaagtagacctcaaagt |
6475580 |
T |
|
| Q |
198 |
tcataaatagagtataaaaatacatatagagtgcccacaaa-tagatcctaatactaatggcggaagtttcaacttatgctttgagtcaaatatg----- |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6475579 |
tcataaatagagtataaaaatacatatagagtgcccacaaacaagatcctaatactaatggcggaagtttcaacttatcatttgagtcaaatatgttttt |
6475480 |
T |
|
| Q |
292 |
-nnnnnnngaagaagctttgagtcaaatatgttaacattaaagtctaaatgattggagttaaatttaccacgaatgagtattatcta |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6475479 |
tttttttttaagaagctttgagtcaaatatgttaacattaaagtctaaatgattggagttaaatttaccacgaatgagtatgatcta |
6475393 |
T |
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