View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5240_low_9 (Length: 358)
Name: NF5240_low_9
Description: NF5240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5240_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 17145605 - 17145358
Alignment:
| Q |
19 |
aatgggggactgatcctttgtttttaggatcatacagttatgttcaagttggttcaagtggtgaagatttagatacaatggctgaaccattaccaatgat |
118 |
Q |
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| T |
17145605 |
aatgggggactgatcctttgtttttaggatcatacagttatgttcaagttggttcaagtggtgaagatttagatacaatggctgaaccattaccaatgat |
17145506 |
T |
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| Q |
119 |
gaaagataaagataatagcaatttttcatatccacttcaaattttgtttgcaggtgaagcaactcacagaactcattattcaacaactcatggagcttac |
218 |
Q |
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| T |
17145505 |
gaaagataa------tagcaatttttcatatccacttcaaattttgtttgcaggtgaagcaactcacagaactcattattcaacaactcatggagcttac |
17145412 |
T |
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| Q |
219 |
ttcagtggtcttagggaagctaataggcttcttcaacattatcattgtgttggg |
272 |
Q |
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| T |
17145411 |
ttcagtggtcttagggaagctaataggcttcttcaacattatcattgtgttggg |
17145358 |
T |
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