View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5241-Insertion-1 (Length: 864)
Name: NF5241-Insertion-1
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 410 - 863
Target Start/End: Complemental strand, 33447351 - 33446898
Alignment:
| Q |
410 |
ctctggaccttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaactgctacttattgtacnnnnnnnn--gtctatcttaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
33447351 |
ctctggaccttattctcaaactcctttgagaaaattcatgactgcttcaagacgaaatccaattgctacttattgtacttttttttttgtctatcttaca |
33447252 |
T |
|
| Q |
508 |
agagagaaaaaagtcttactcattcaagatgtttttaaattacattcaaaagctaactgttacatcatgaaagcataagaacatagacaaaccgtgccgg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447251 |
agagagaaaaaagtcttactcattcaagatgtttttaaattacattcaaaagttaactgttatatcatgaaagcataagaacatagacaaaccgtgccgg |
33447152 |
T |
|
| Q |
608 |
aaagggcataggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaacacgaccttcaaaatttcggtttccagaaagaacaga |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447151 |
aaagggcataggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaacacgaccttcaaaatttcggtttccagaaagaacaga |
33447052 |
T |
|
| Q |
708 |
agcagcaataatgtctgcaaaggttggaacaagaagattaaagcagggtcgtggttattaagttataaaatgaaaatgaaatatctggcattatcttaat |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
33447051 |
agcagcaataatgtctgcaaaggttggaacaagaagtttaaagcagggtcgtggttattaagatataaaatgaaaaagaaatatct-gtattatcttaat |
33446953 |
T |
|
| Q |
808 |
gtataccattttctgaaattgccagatgccaccgagttatcaagttctccagaatt |
863 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
33446952 |
gtgtaccattttctgaaattg-cagatgccaccgagttatcgagttctccggaatt |
33446898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 33447718 - 33447336
Alignment:
| Q |
7 |
aatatacatgtcaaagtctaattattaaatgatattcagagtaaattaacaatataacattgatctcatagcttagtttctgnnnnnnnctacctttgaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
33447718 |
aatatacatgtcaaagtctaattattaaatgatattcagagtaaattaacaatattacattgatctcatagcttaatttctgtttttttctacctttgaa |
33447619 |
T |
|
| Q |
107 |
acctcttcattacttggccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctcttcatagaagttgatgtcaacctgaaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447618 |
acctcttcattacttggccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctcttcatagaagttgatgtcaacctgaaatg |
33447519 |
T |
|
| Q |
207 |
taaattgtccttgagctaaaatttaaattaagcatgaatttaaaagtgtcgaagattcaaaaatcattgaaatgattcaggaaaactgaaactcgtatag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447518 |
taaattgtccttgagctaaaatttaaattaagcatgaatttaaaagtgtagaagattcaaaaatcattgaaatgattcaggaaaactgaaactcgtatag |
33447419 |
T |
|
| Q |
307 |
ttaccaagtgnnnnnnnnatagacaaatggtagtaatgatatgttatgtttgtagtcgggatttcaactcttgaccttattct |
389 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33447418 |
ttaccaagtgttttttttatagacaaatggtagtaatgatatgttatgtttgtagtcgggatttcaactctggaccttattct |
33447336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 671
Target Start/End: Complemental strand, 9097754 - 9097684
Alignment:
| Q |
601 |
gtgccggaaagggcataggcaacaactaatggaggagaagcaaggtagtttgctcttgttaacggatgaac |
671 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||| |||||||| || || ||||| |||||||| |
|
|
| T |
9097754 |
gtgccggcaagggcataggcaacaacgagaggaggagaagctaggtagttagccctcgttaatggatgaac |
9097684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University