View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5241-Insertion-2 (Length: 466)

Name: NF5241-Insertion-2
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5241-Insertion-2
NF5241-Insertion-2
[»] chr8 (4 HSPs)
chr8 (95-410)||(29274504-29274819)
chr8 (32-76)||(29274439-29274483)
chr8 (418-466)||(29274851-29274899)
chr8 (309-353)||(35673393-35673437)
[»] chr3 (2 HSPs)
chr3 (103-254)||(44226006-44226156)
chr3 (317-358)||(27972591-27972632)
[»] scaffold0031 (1 HSPs)
scaffold0031 (124-255)||(95729-95861)
[»] chr7 (2 HSPs)
chr7 (99-174)||(2508124-2508198)
chr7 (370-410)||(44963222-44963262)
[»] chr5 (2 HSPs)
chr5 (310-359)||(6742541-6742590)
chr5 (366-410)||(6569892-6569936)
[»] chr4 (1 HSPs)
chr4 (309-358)||(28395614-28395667)
[»] chr2 (2 HSPs)
chr2 (313-357)||(45033361-45033405)
chr2 (310-358)||(45035155-45035203)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 95 - 410
Target Start/End: Original strand, 29274504 - 29274819
Alignment:
Q  95 attggcaaaggataaatatattaaaaagaaaacaaagacatacaaagactgtgaggacatatgacctgacccagatacaatctatatgtgaatatatcat 194  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||| ||| |||||||||||| |||||  |||||||  |    
T  29274504 attggcaaaggataaatatatttaaaagaaaacaaagacatacaaagattgttgggacatatgacatgatccagatacaatccatatgacaatatatagt 29274603  T
Q  195 gataaagcaaaacca-cctaatcaatcctaataaacaagcactcgtctcaagcgctacctagcacacatatagggatggagattgttcttatgggagtat 293  Q
    |||||||||||| || ||||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||| || | ||||||||| |||||||||    
T  29274604 gataaagcaaaatcagcctaatcaatcctaacaaacaagcactcatctcaagcgcaacctagcgcacatataggggtgaaaattgttcttctgggagtat 29274703  T
Q  294 tagtaatgagagg--atattctctctaggaatcatcacaaagatagaaataaataaaagatatgaaaagtacataatgagtgtttcaatatatagagatt 391  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||   |||||||| | |||||||||| ||||||||| |||| ||||||| |||||    
T  29274704 tagtaatgagaggatatattctctctaggaatcatcacaaagataga---aaataaaaaacatgaaaagtatataatgagtatttctatatataaagatt 29274800  T
Q  392 aattggagtaactaactct 410  Q
    ||||||||||| |||||||    
T  29274801 aattggagtaattaactct 29274819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 29274439 - 29274483
Alignment:
Q  32 ttattcactatgtgtgcttttgctagtgcaataaggtacgaagtc 76  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  29274439 ttatttactatgtgtgcttttgctagtgcaatatggtacgaagtc 29274483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 29274851 - 29274899
Alignment:
Q  418 ctaacaaacatatcagtaactatagttgattaactatttagctaacata 466  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||    
T  29274851 ctaacaaacacatccgtaactatagttgattagctatttagctaacata 29274899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 35673393 - 35673437
Alignment:
Q  309 attctctctaggaatcatcacaaagatagaaataaataaaagata 353  Q
    |||||||||| ||||||||||| ||||| |||| |||||||||||    
T  35673393 attctctctatgaatcatcacagagatataaatgaataaaagata 35673437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 44226006 - 44226156
Alignment:
Q  103 aggataaatatattaaaaagaaaacaaagacatacaaagactgtgaggacatatgacctgacccagatacaatctatatgtgaatatatcatgataaagc 202  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||| | ||||||| ||||| ||||| |||  ||||||||    
T  44226006 aggataaatatattaaaaagaaaacaaagacatacaaaaact-tggggacatatgacatgaccctggtacaatccatatgagaatacatcgcgataaagc 44226104  T
Q  203 aaaaccacctaatcaatcctaataaacaagcactcgtctcaagcgctaccta 254  Q
    |||||||||||||||||||||| |||||| |||| || |||||||| |||||    
T  44226105 aaaaccacctaatcaatcctaacaaacaaacacttgtttcaagcgcaaccta 44226156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 27972632 - 27972591
Alignment:
Q  317 taggaatcatcacaaagatagaaataaataaaagatatgaaa 358  Q
    ||||| |||||||||| |||||||| ||||||||||||||||    
T  27972632 taggagtcatcacaaatatagaaatgaataaaagatatgaaa 27972591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 255
Target Start/End: Original strand, 95729 - 95861
Alignment:
Q  124 aaacaaagacatacaaagactgtgaggacatatgacctgacccagatacaatctatatgtgaatatatcatgataaagcaaaacca-cctaatcaatcct 222  Q
    ||||||||||||| |||||||  |  ||||||| |||||| |||| ||||| | ||||   |||| ||| |||||||||||||||| ||||||||||| |    
T  95729 aaacaaagacatagaaagactagggagacatataacctgaaccaggtacaacccatatcgaaatacatcgtgataaagcaaaaccaccctaatcaatcgt 95828  T
Q  223 aataaacaagcactcgtctcaagcgctacctag 255  Q
    || |||||| ||| |||| ||||||| ||||||    
T  95829 aacaaacaaacacacgtcccaagcgcaacctag 95861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 2508124 - 2508198
Alignment:
Q  99 gcaaaggataaatatattaaaaagaaaacaaagacatacaaagactgtgaggacatatgacctgacccagatacaa 174  Q
    |||||||| |||||||||||||| ||||  || |||||||||||||| | |||||| ||||||||||||| |||||    
T  2508124 gcaaaggaaaaatatattaaaaacaaaaacaaaacatacaaagactggggggacat-tgacctgacccaggtacaa 2508198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 44963262 - 44963222
Alignment:
Q  370 agtgtttcaatatatagagattaattggagtaactaactct 410  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  44963262 agtgttcctatatatagagattaatttgagtaactaactct 44963222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 6742590 - 6742541
Alignment:
Q  310 ttctctctaggaatcatcacaaagatagaaataaataaaagatatgaaaa 359  Q
    ||||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  6742590 ttctctctacgagtcatcacaaagatagaaataaataaaaaatatcaaaa 6742541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 6569936 - 6569892
Alignment:
Q  366 aatgagtgtttcaatatatagagattaattggagtaactaactct 410  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||    
T  6569936 aatgagtgttcctatatatagagattagttggactaactaactct 6569892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 28395614 - 28395667
Alignment:
Q  309 attctctctaggaatcatcacaa----agatagaaataaataaaagatatgaaa 358  Q
    ||||||||||||| |||||||||    |||||||||| ||||||||||||||||    
T  28395614 attctctctaggagtcatcacaaagatagatagaaatgaataaaagatatgaaa 28395667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 45033405 - 45033361
Alignment:
Q  313 tctctaggaatcatcacaaagatagaaataaataaaagatatgaa 357  Q
    ||||||||| |||||||||||||  |||| |||||||||||||||    
T  45033405 tctctaggagtcatcacaaagatgcaaatgaataaaagatatgaa 45033361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 45035203 - 45035155
Alignment:
Q  310 ttctctctaggaatcatcacaaagatagaaataaataaaagatatgaaa 358  Q
    |||||||||||| |||||||||||||  |||| |||||||||| |||||    
T  45035203 ttctctctaggagtcatcacaaagatgcaaatgaataaaagatttgaaa 45035155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University