View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5241-Insertion-4 (Length: 225)
Name: NF5241-Insertion-4
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 50878526 - 50878746
Alignment:
| Q |
5 |
acaagcattctccaattgaagaatattgtaacgattacataaaataatgaagaataaatattttttacatttgatatgtgaccaattaagaacaacccaa |
104 |
Q |
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| T |
50878526 |
acaagcattctccaattgaagaatattgtaacgattacataaaataatgaagaataaatattttttacatttgatatgtgaccaattaagaacaacccaa |
50878625 |
T |
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| Q |
105 |
acccccaccacgatgagtgtgggtgggagacgttttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgcttggtaattaa |
204 |
Q |
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| T |
50878626 |
acccccaccacgatgagtgtgggtgggagacgttttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgcttggtaattaa |
50878725 |
T |
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| Q |
205 |
gttaacaaacttaaaagcatc |
225 |
Q |
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| T |
50878726 |
gttaacaaacttaaaagcatc |
50878746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 36787072 - 36787296
Alignment:
| Q |
3 |
caacaagcattctccaattgaagaatattgtaacgattacataaaataatgaagaataaatattttttacatttgatatgtg------accaattaagaa |
96 |
Q |
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| T |
36787072 |
caacaagcattctctaaccgaagaatactgtaacaattacacaaaataatgaagaataaatattatt-acatttgatatttgtgtttgaccaattaagaa |
36787170 |
T |
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| Q |
97 |
caacccaaacccccaccacgatgagtgtgggtgggagacgtt-ttgtcaattttagaaaaattaaagttaaacctaaataaattaatttagaatttgctt |
195 |
Q |
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| T |
36787171 |
caacccaaaccctcggta--atgagtgtggctgggagacgttgttgtcaattttagaaaaattaaggttaaacctaaatgaattga-ttagagtttactt |
36787267 |
T |
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| Q |
196 |
ggtaattaagttaacaaacttaaaagcat |
224 |
Q |
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| T |
36787268 |
ggtgattaagttaacgaatttaaaagcat |
36787296 |
T |
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