View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5241_high_11 (Length: 313)
Name: NF5241_high_11
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 42667128 - 42667435
Alignment:
| Q |
1 |
aatcatagctgaaacatgatgttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataa |
100 |
Q |
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| T |
42667128 |
aatcatagctgaaacatgattttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataa |
42667227 |
T |
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| Q |
101 |
gaaggcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgcttcttcattggaggttcagaatttataa |
200 |
Q |
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| T |
42667228 |
gaaggcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgcttcttcattggaggttcagaatttataa |
42667327 |
T |
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| Q |
201 |
tgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcagaatttataatgttctgaaaattttcaacgcttttatgtct |
300 |
Q |
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| T |
42667328 |
tgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcagaatttataatgttctgaaaattttcaacgcttttatgtct |
42667427 |
T |
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| Q |
301 |
ctgcttct |
308 |
Q |
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||||||| |
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| T |
42667428 |
atgcttct |
42667435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 42667311 - 42667439
Alignment:
| Q |
118 |
aggttcagaattcagaatgctctgaaaattttcaacgcttttat---gtctatgctgcttcttcattggaggttcagaatttataatgttctgaaaattt |
214 |
Q |
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|||||||||||| | |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667311 |
aggttcagaatttataatgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcagaatttataatgttctgaaaattt |
42667410 |
T |
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| Q |
215 |
tcaacgcttttattatgtctatgcttcttctt |
246 |
Q |
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| T |
42667411 |
tcaacgcttttat---gtctatgcttcttctt |
42667439 |
T |
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