View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5241_high_3 (Length: 419)
Name: NF5241_high_3
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 33448284 - 33448689
Alignment:
| Q |
1 |
ctgttaagtctcatgtggaaaaaattacttaaaaacttcatgcttataacttagaggtataaggaagctgatcaggacgccattatcttggccggagcag |
100 |
Q |
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| T |
33448284 |
ctgttaagtctcatgtggaaataattacttaaaaacttcatgcttataacttagaggtataaggaagctgatcaggacgccattatcttggccggagcag |
33448383 |
T |
|
| Q |
101 |
attatggaactggaagctctcgagattgggctgcgaagggtcctctcctacttgtaagctcacaccttacaaaatactgttgtttcaatatatttttgag |
200 |
Q |
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| T |
33448384 |
attatggaactggaagctctcgagattgggctgcgaagggtcctctcctacttgtaagctcacaccttacaaaatactgttgtttcaatatatttttgag |
33448483 |
T |
|
| Q |
201 |
tttaatgattctatattaacagtgtaaattgttccggtatatattaaacaaagttttacgcagatgttcaatcttatctatgttgatcagacgtttgtac |
300 |
Q |
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| T |
33448484 |
tttaatgattctatattaacagtgtaaattgttccagtatatattaaacaaagttttacgcagatgttcaatcttatctatgttgatcagacgtttgtac |
33448583 |
T |
|
| Q |
301 |
gtaataactatatagggggtgaaggcagtgattgctaagagctttgagagaattcatcgcagtaatcttgttgggatggggatcattcctcttcgcttca |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33448584 |
gtaataactatatagggggtgaaagcagtgattgctaagagctttgagagaattcatcgcagtaatcttgttgggatggggatcattcctcttcgcttca |
33448683 |
T |
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| Q |
401 |
agtctg |
406 |
Q |
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|||||| |
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| T |
33448684 |
agtctg |
33448689 |
T |
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