View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5241_low_1 (Length: 572)
Name: NF5241_low_1
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241_low_1 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-169; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 33390064 - 33390369
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390064 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
33390163 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390164 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
33390263 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33390264 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataaaattataccatc |
33390363 |
T |
|
| Q |
309 |
acgtac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
33390364 |
acgtac |
33390369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 33402606 - 33402906
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33402606 |
acatcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagcaagggttgtcttccctattcctcccattccacaaattc |
33402705 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33402706 |
ttatagcacgaacaccatcaaccaagtccaaaaccaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaaga |
33402805 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||| |||| |
|
|
| T |
33402806 |
tttgcactccaatatattcattatcttttgaacaatctttttaatctctccagcttgtggcctgaaagttccaaaagttgttcaaaaacattatatcatc |
33402905 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
33402906 |
a |
33402906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 33642690 - 33642389
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642690 |
acatcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattc |
33642591 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| | |||| |
|
|
| T |
33642590 |
ctatagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaatcccaactaaatcttttgaaacacttaaaga |
33642491 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||| | |||| |
|
|
| T |
33642490 |
cttgcactctaatatattgattatcttttgaacaatctttttaatctctgcagcttgtggcctgaaa-ttcaa---tttgttcaataacattaaatcatc |
33642395 |
T |
|
| Q |
309 |
acgtac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
33642394 |
acgtac |
33642389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 31567216 - 31566925
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
31567216 |
acatcatcaatataacaagatgcactaaatcgatgagatatttggccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattc |
31567117 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
31567116 |
ctatagcacgaacaccatcaatcgagtccaaaagcaaatgattttgtaacgcttctataggagaatcaatcccaactaaatcttttgaaacacatgaaga |
31567017 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacatta |
301 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||| | | |||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31567016 |
tttgcactccaatatattcattattgtttgagcaatctttttaatctctcaagattgtggcctgaaagtt-aaaaagttgttcaataacatta |
31566925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 33059555 - 33059854
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33059555 |
acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc |
33059654 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | |
|
|
| T |
33059655 |
ctatagcacgaacaccatcaactgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatcccaactaaatcttttgaaacacatgaata |
33059754 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||| |||||| || | | || ||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
33059755 |
tttgcattccaatatattgattatcttttgaacaatctctttaatttctctagctagtggcctgaaagttcaaaaaattgttcagtaacattatatcatc |
33059854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 33306498 - 33306772
Alignment:
| Q |
29 |
tgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
33306498 |
tgcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattcctatagcacaaacacaatca |
33306597 |
T |
|
| Q |
129 |
actgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattca |
228 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||| |
|
|
| T |
33306598 |
accgagtccaaaagcaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaaatatatgaagatttgcactccaatatactca |
33306697 |
T |
|
| Q |
229 |
ttatcctttgaacaatctttttaatctcaccaacttgtggcctgaa---agttcaaaatgttgttcaataacatt |
300 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
33306698 |
ttatcttttgaacaatctttttaatcactccagcttgtggcctgaaattagttcaaaaagttgttcaataacatt |
33306772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 9168768 - 9169034
Alignment:
| Q |
11 |
atcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcct |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168768 |
atcatcaataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcct |
9168867 |
T |
|
| Q |
111 |
atagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaat |
210 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| | |
|
|
| T |
9168868 |
atagcacgaacaccatcaattgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaagatt |
9168967 |
T |
|
| Q |
211 |
tgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt |
278 |
Q |
| |
|
|||||||| |||| ||||||||| |||| |||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
9168968 |
tgcactcc-atatgttcattatcttttgtacaatctttttagtctcagcagattgtggcctgaaagtt |
9169034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 31560897 - 31560628
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31560897 |
acatcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattc |
31560798 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| |
|
|
| T |
31560797 |
ctataacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaaacacatgaaga |
31560698 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt |
278 |
Q |
| |
|
||| ||| |||||||||||||||| | ||||||||||||| ||||| | | |||||||||||||||| |
|
|
| T |
31560697 |
tttgtacttcaatatattcattatcgtccgaacaatctttttcatctctcgagattgtggcctgaaagtt |
31560628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 33360071 - 33360371
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||||||| || |||||||||| | ||||| |||||| ||||||||||| | ||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
33360071 |
acatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattc |
33360170 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||| | |
|
|
| T |
33360171 |
ctatagcacgaacaccatcaaccgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatctcaactaaatcttttgaaacacatgaata |
33360270 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||| || |||||| || | | || ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
33360271 |
tttgcattccaatatattgattatcttttgaacaacctctttaatttctctagctagtggcctgaaagttcaaaaagttgttcaataacattatatcatc |
33360370 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
|
| |
|
|
| T |
33360371 |
a |
33360371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 33273784 - 33274089
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33273784 |
acatcatctataaaacaggatgcactaaatcgatgagatatttgatcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattc |
33273883 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||| ||||||||||||||| | |||| | ||||||| ||||| ||||||||||| |||| ||||||||| |
|
|
| T |
33273884 |
ctatagcacgaacactgtcaaccgagtccaaaagtaaatgattttgtaatccgtctaaacgagaatctatcccaactaaatcttttgaaaaacatgaaga |
33273983 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
||| ||| ||||||||||| ||| |||||||||||||||||||||| ||| |||| |||||| |||||||||| || |||||||| |||||| |||| |
|
|
| T |
33273984 |
tttgtacttcaatatattcaagatcgtttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaatttttcaataatattatatcatc |
33274083 |
T |
|
| Q |
309 |
acgtac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
33274084 |
acgtac |
33274089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 33411945 - 33412250
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||| || ||||||||| |||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33411945 |
acatcgtctataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctattccgcccattccacaaattc |
33412044 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
| |||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||| ||||| ||||||||||| |||| ||||||| |
|
|
| T |
33412045 |
caatagcacaaacaccatcaaccgagtccaaaagtaaatgattttgtaatacttctatccgagaatttatcccaactaaatcttttgaaatgaatgaaga |
33412144 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
33412145 |
tttacaatccaatatattcattatattttgaacaatctttttaatctctccagcttgtggcctgaaagttcagaaagttgttcaataacattatatcatc |
33412244 |
T |
|
| Q |
309 |
acgtac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
33412245 |
acgtac |
33412250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 33264641 - 33264946
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| | |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
33264641 |
acatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattc |
33264740 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||| ||| | ||||| ||||| |||||||||||||| |
|
|
| T |
33264741 |
ctatagcacgaacaccatcaaccatgtccaaaaggaaatgattttgtaatgcttctaaacgagaatctatcgcaactaagtcttttgaaacacatgaaga |
33264840 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacattataccatc |
308 |
Q |
| |
|
||||| |||||| || |||||||| |||||||||||||||||||||| ||| |||| |||||| |||||||||| || |||||||| |||||| |||| |
|
|
| T |
33264841 |
tttgcattccaatgtactcattatcttttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaattattcaataatattatatcatc |
33264940 |
T |
|
| Q |
309 |
acgtac |
314 |
Q |
| |
|
|||||| |
|
|
| T |
33264941 |
acgtac |
33264946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 33287534 - 33287826
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||| |||||||| |||||||||| ||| | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33287534 |
acatcttcaataaaacaagatccactaaatcgatgggatatttgatcatataaagccatagaaagggttgttttccctattcctcccattccacaaattc |
33287633 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||| ||| |||| |||||||| || |||||| |||||||| ||||||| |||||||||||||||| |||| | ||||||||||| ||||| |||||||| |
|
|
| T |
33287634 |
ctattgcacgaactccatcaaccgaatccaaatgcaaatgactttgtaaggcttctataggagaattaatcgcaactaaatcttttgaaacccatgaaga |
33287733 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacatta |
301 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| || ||||||| || |||||||||| | |||||||| |||||||||||| |||| |
|
|
| T |
33287734 |
tttgcactccaatatattcattatcgtctgaacaatcattctaatctctgcagattgtggcctggacgttcaaaaagttgttcaataatatta |
33287826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 384 - 545
Target Start/End: Original strand, 25209292 - 25209451
Alignment:
| Q |
384 |
tttgaaataacaagtttggatcgatttaaaatacctttttaaactaagaaaaagcacaatgatgattatatattgacaatgatctaagttactaagaaat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25209292 |
tttgaaataacaagtttggatcgatttaaaatacctttttaaacaaagaaaaagcacaatgatgattata--ttgacaatgatctaagttactaagaaat |
25209389 |
T |
|
| Q |
484 |
ttttgttcatcaagctttctaagatcacaaagtgttgcaaactatacttcaatatatataga |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25209390 |
ttttgttcatcaagctttctaagatcacaaagtgttgtaaactatacttcaatatatataga |
25209451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 13609164 - 13609093
Alignment:
| Q |
69 |
gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaa |
140 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||| |||| | | ||||| ||||| ||||||||||| |
|
|
| T |
13609164 |
gcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa |
13609093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 17438916 - 17438647
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
17438916 |
acatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattc |
17438817 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
17438816 |
ctatagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaaga |
17438717 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt |
278 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
17438716 |
tttgcattccaatatattcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtt |
17438647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 8752 - 8992
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| | |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8752 |
acatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattc |
8851 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
||||| || ||||||||||||| || | |||||| || |||| || |||||||||| || |||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
8852 |
ctataacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaaga |
8951 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttt |
249 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
8952 |
tttgcacttcaatatattcaagatcgtttgaacaatctttt |
8992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 17 - 231
Alignment:
| Q |
35 |
aaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgag |
134 |
Q |
| |
|
|||||||||| | |||||| |||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||| || |
|
|
| T |
17 |
aaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaa |
116 |
T |
|
| Q |
135 |
tccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattcattatcc |
234 |
Q |
| |
|
| |||||| || |||| || |||||||||| || |||||| ||||| ||||||||||| ||||| ||||||| ||||||| ||||||||||| ||| |
|
|
| T |
117 |
ttcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacgaatgaagatttgcacttcaatatattcaagatcg |
216 |
T |
|
| Q |
235 |
tttgaacaatctttt |
249 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
217 |
tttgaacaatctttt |
231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 31477062 - 31476812
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||| ||| ||||||| | |||| |||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31477062 |
acatcatcaataaaacagcatgcaccaaattgatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattc |
31476963 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
||| | |||||||| ||||||| ||||||||||| ||| | |||| |||| ||| | |||||||||| ||||| |||||||| || ||| ||| |||||| |
|
|
| T |
31476962 |
ctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaatcgtttgaagcacttgaaga |
31476863 |
T |
|
| Q |
209 |
a---ttgcactccaatatattcattatcctttgaacaatctttttaatctc |
256 |
Q |
| |
|
|||| ||||| ||| | ||||||| |||||| |||||||||||||| |
|
|
| T |
31476862 |
taatttgctgtccaaaatagttattatccgttgaactatctttttaatctc |
31476812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 31502184 - 31501940
Alignment:
| Q |
9 |
acatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattc |
108 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||||||| ||| ||||||| | | | |||||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
31502184 |
acatcatcgataaaacaacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggttgtcttccctattccacccatcccacagattc |
31502085 |
T |
|
| Q |
109 |
ctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacacatgaaga |
208 |
Q |
| |
|
||| ||| |||||| ||||||| |||||||| || ||| | |||| |||||||| |||| ||||| |||| || |||| ||||| ||||||||||| || |
|
|
| T |
31502084 |
ctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaatgcttgtatatgagaaacaattccaactatgtcttttgaaacacatgatga |
31501985 |
T |
|
| Q |
209 |
attgcactccaatatattcattatcctttgaacaatctttttaat |
253 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || || |||||||| |
|
|
| T |
31501984 |
gttgcaatccaaaatatttattatcctttggacgatatttttaat |
31501940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 256
Target Start/End: Complemental strand, 31496955 - 31496768
Alignment:
| Q |
69 |
gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctatag |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| || || || ||| ||| ||||||||||| ||| | |||| |||| || ||| |
|
|
| T |
31496955 |
gcaagggtagtcttccctattcctcccatcccacaaattcctatgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatttttgcatat |
31496856 |
T |
|
| Q |
169 |
gagaatcaatccctactaaatctttcgaaacacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctc |
256 |
Q |
| |
|
|||| || ||||| |||||||| || ||||||||| ||| ||||| ||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
31496855 |
gagagtccatcccaactaaatcatttgaaacacatatagatttgcaatccaaaatatccattatcctttgaacaatttttttaatctc |
31496768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 31019782 - 31019913
Alignment:
| Q |
11 |
atcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcct |
110 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | || || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31019782 |
atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattcct |
31019881 |
T |
|
| Q |
111 |
atagcatgaacaccatcaactgagtccaaaag |
142 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||| |
|
|
| T |
31019882 |
acaacccgaacatcatcaaccgagtccaaaag |
31019913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 31150388 - 31150508
Alignment:
| Q |
69 |
gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctatag |
168 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||| | || | ||| |||||| ||||||||||| ||||| |||| |||| | | || || |
|
|
| T |
31150388 |
gcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagag |
31150487 |
T |
|
| Q |
169 |
gagaatcaatccctactaaat |
189 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
31150488 |
gagaatgcatcccgactaaat |
31150508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 31029663 - 31029794
Alignment:
| Q |
11 |
atcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcct |
110 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | | || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31029663 |
atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattcct |
31029762 |
T |
|
| Q |
111 |
atagcatgaacaccatcaactgagtccaaaag |
142 |
Q |
| |
|
| | | ||||| ||||||| ||||||||||| |
|
|
| T |
31029763 |
acaacccgaacatcatcaaccgagtccaaaag |
31029794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 31489764 - 31489633
Alignment:
| Q |
11 |
atcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcct |
110 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| ||||| ||||||||| | || || ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31489764 |
atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattcct |
31489665 |
T |
|
| Q |
111 |
atagcatgaacaccatcaactgagtccaaaag |
142 |
Q |
| |
|
| | | ||||| |||||| ||||||||||| |
|
|
| T |
31489664 |
acaacccgaacatcatcaatggagtccaaaag |
31489633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 31159295 - 31159362
Alignment:
| Q |
75 |
gttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaag |
142 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| | | ||||| ||||||| ||||||||||| |
|
|
| T |
31159295 |
gttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaaag |
31159362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 31161692 - 31161794
Alignment:
| Q |
79 |
tcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaat |
178 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||| | | | ||| ||||||| || |||||||| ||||| |||| |||| ||||| || ||||||| || |
|
|
| T |
31161692 |
tcttccctattccacccatcccacaaactcctacaacccgcacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat |
31161791 |
T |
|
| Q |
179 |
ccc |
181 |
Q |
| |
|
||| |
|
|
| T |
31161792 |
ccc |
31161794 |
T |
|
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