View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5241_low_2 (Length: 388)
Name: NF5241_low_2
Description: NF5241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5241_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 105 - 375
Target Start/End: Original strand, 37912402 - 37912672
Alignment:
| Q |
105 |
gtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaatac |
204 |
Q |
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| T |
37912402 |
gtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcagaagaacgatctgaacaagaagatgaaaaagaggatttgagaagatgaatac |
37912501 |
T |
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| Q |
205 |
gattggaaatatcagtaggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttg |
304 |
Q |
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| T |
37912502 |
gattggaaatatcagtgggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttg |
37912601 |
T |
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| Q |
305 |
ggtgttgttacgaagatccatcaggttggataagagtctggtggtgttggcaatggtgggggtgaagttgg |
375 |
Q |
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| T |
37912602 |
ggtgttgttacgaagatccatcaggttggataagagtctggtggtggtggcaatggtgggggtgaagttgg |
37912672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 136
Target Start/End: Original strand, 37905891 - 37905922
Alignment:
| Q |
105 |
gtaccgtctttggcgaattcggaaaggacaaa |
136 |
Q |
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| T |
37905891 |
gtaccgtctttggcgaattcggaaaggacaaa |
37905922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 26464122 - 26464210
Alignment:
| Q |
114 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
202 |
Q |
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| T |
26464122 |
ttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagtggatttgagaaaatgaat |
26464210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 31197858 - 31197946
Alignment:
| Q |
114 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
202 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||| | |||| ||||||| |||||| |||||||||||||||||| |
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| T |
31197858 |
ttggcgaattcggagaggacggagagagcacaattagcggaagaacggtttgaaggagaagacaaaaaagcggatttgagaagatgaat |
31197946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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