View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5242-Insertion-1 (Length: 1085)

Name: NF5242-Insertion-1
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5242-Insertion-1
NF5242-Insertion-1
[»] chr2 (2 HSPs)
chr2 (8-1080)||(24769015-24770085)
chr2 (9-225)||(22818894-22819110)
[»] scaffold0437 (1 HSPs)
scaffold0437 (11-1053)||(1139-2181)
[»] chr8 (2 HSPs)
chr8 (13-114)||(23111045-23111146)
chr8 (939-1053)||(23111973-23112088)
[»] chr1 (3 HSPs)
chr1 (8-396)||(14995331-14995722)
chr1 (698-736)||(14994992-14995030)
chr1 (355-440)||(20751560-20751644)
[»] chr3 (1 HSPs)
chr3 (44-128)||(10800745-10800827)
[»] chr4 (3 HSPs)
chr4 (8-112)||(22285158-22285262)
chr4 (942-1016)||(22284258-22284332)
chr4 (698-736)||(22284540-22284578)


Alignment Details
Target: chr2 (Bit Score: 757; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 8 - 1080
Target Start/End: Original strand, 24769015 - 24770085
Alignment:
Q  8 attttctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaa 107  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  24769015 attttttggcaggaaaaagctagggttaattagcacttgaatggtgacagaaattcaaaatattttcaaag--ttacaaagataaaaaacaagacaaaaa 24769112  T
Q  108 ttatttcatctatcagaaacaatgaagaaatgatatctgaacgtcatagaatatcagaacatatggtgaattattgtaataatttgtttgtttctactaa 207  Q
    | ||||||||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  24769113 tcatttcatctatcagaaacaatgaagaaatcatatccgaacctcatagattattagaacatgtggtgaattattgtaataatttgtttgtttctactaa 24769212  T
Q  208 cacttttttgcaggaacacttgcttgtagctgaagtaatccctcaaatgattgatgacatcaccaacaatctcctcatcatgaccccaacagaagatgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  24769213 cacttttttgcaggaacacttgcttgtagctgaagtaatccctcaaatgattaatgacatcaccaacagtctgctcatcatgaccccaacagaagatgaa 24769312  T
Q  308 gtcacaaatgttgcgttcaatttcaattatgatggtgctctaggacaagatgggtttggtactaatttcttccaaacatattgggaaattatcaaaaaag 407  Q
    || | ||||| ||||||||| || |||| ||||||||||| ||||| |||||| ||| || ||||||||||||||||||| |||||||||||| ||||||    
T  24769313 gtaaaaaatgctgcgttcaaattgaattttgatggtgctccaggaccagatggattttgtgctaatttcttccaaacatactgggaaattatc-aaaaag 24769411  T
Q  408 atgttcatgttgccgtaactcaattttttcagaatcgatggcttccttctaattacaatgcaaacattctcattcccatcccccaaaactctaaatgcag 507  Q
    ||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||  ||| || |||||||||||||||||    
T  24769412 atgttcatgctgctgtgactcaattttttcaaaatcgatggcttccttctaattacaatgctaacactctcattttcat-cctcaaaactctaaatgcag 24769510  T
Q  508 ataacatagatcaatacaggcctcttgctttagcaaacttaaaattcaagatcataactaaggtactggaagacagactctctcatattctccctaattt 607  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24769511 atagcatagatcaatacaggcctctagctttagcaaacttaaaattcaagatcataactaaggtactggcagacagactctctcatattctccctaattt 24769610  T
Q  608 gatttccaaggaataaagagga-ttataaggggcgggaatattaaagactgcatagctatcacttccgaagctataaatatgatggatagaagatgtttt 706  Q
    |||| |||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24769611 gattaccaaggaacaaagagaatttataaggggcggaaatattaaagactgcatagctatcacttccgaagctataaatatgctggatagaagatgtttt 24769710  T
Q  707 ggaggtaacttagcaatgaagatagatgtggccaaggaatttggcaccttaagataggattttctattatctgttttgaaaagttttggttttcatccat 806  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  24769711 ggaggtaacttagcaatgaagatagatgtggccaaggcatttgacaccttaagatgggattttctgttatttgttttgaaaagttttggttttcatccat 24769810  T
Q  807 aattttgtagctggattcttgctatactgcagtctcctaacatttcaatctccattaatggtgctcaacatggatactttaaatgtaata-tagtgtcag 905  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||     
T  24769811 aattttgtagctggattcttgttatactgcagtcccctaacatttcaatctccattaatggtgctcaacatggatactttaaatgtaataggggtgtcat 24769910  T
Q  906 ataagaggtcctctttctcctctccttttctatttagctgaggaagttcttagtagaggtatcaagaaacttgtggatgatgggaaagttgaattaatca 1005  Q
    |||||   || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24769911 ataaggaatcttctttctcctctccttttctgtttagctgaggaagttcttagtagaggtatcaagcaacttgtggatgatgggaaagttgaattaatca 24770010  T
Q  1006 aagcttctagaaaagcc-atattccttcccaatgtttctatgctgatgattaatgggtggttttgcaagggtaaga 1080  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||||||| |  ||| ||||||||| |||||||    
T  24770011 aagcttctagaaaagccaatattccttcccattgtttctatgttgatgatttaatggt-gttttgcaaaggtaaga 24770085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 22818894 - 22819110
Alignment:
Q  9 ttttctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaat 108  Q
    ||||||||||||||| |||||| ||||  | | | |||||||| || |||||| |||| ||||||||||||||||| || |||||||| || || ||| |    
T  22818894 ttttctggcaggaaaaagctagagttagctggtatttgaatggtgatagaaatacaaagtattttcacagagttaccaaaataaaaaataaaaccaaagt 22818993  T
Q  109 tatttcatctatcagaaacaatgaagaaatgatatctgaacgtcatagaatatcagaacatatggtgaattattgtaataatttgtttgtttctactaac 208  Q
    |||  ||  ||| ||| ||||||| ||||| ||||| || | ||| ||||||||  | ||| | |||   || | ||||||||||||| ||||    |||    
T  22818994 tatagcaaatattagacacaatgatgaaatcatatcagatcctcaaagaatatctcagcatgtagtgtcatactataataatttgtttttttccctaaac 22819093  T
Q  209 acttttttgcaggaaca 225  Q
    |||||||||||||||||    
T  22819094 acttttttgcaggaaca 22819110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 1053
Target Start/End: Complemental strand, 2181 - 1139
Alignment:
Q  11 ttctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaatta 110  Q
    ||||||||||||| |||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||    
T  2181 ttctggcaggaaaaagctagggttaattggcatttgaatggtgacagaaattctaaatattttcacagagttacaaagatcaaaaacaaaacaaaaatta 2082  T
Q  111 tttcatctatcagaaacaatgaagaaatgatatctgaacgtcatagaatatcagaacatatggtgaattattgtaataatttgtttgtttctactaacac 210  Q
    |||||||| |||||||||||||||| || |||||||| | ||| || ||||| || ||| |||| ||||||| ||| ||||||||| |||||||||||      
T  2081 tttcatctctcagaaacaatgaagatattatatctgaccctcaaagtatatctgagcatgtggtaaattattataagaatttgtttttttctactaac-- 1984  T
Q  211 ttttttgcaggaacacttgcttgtagctgaagtaatccctcaaatgattgatgacatcaccaacaatctcctcatcatgaccccaacagaagatgaagtc 310  Q
     ||||||||||||||  | ||||| | |||||| || |||||  |||||||||||| ||| || ||||| || |||||||  |||||  |||| || |||    
T  1983 -tttttgcaggaacaggtacttgtggatgaagttattcctcatttgattgatgacaccactaataatctgctaatcatgatgccaactaaagaggaggtc 1885  T
Q  311 acaaatgttgcgttcaatttcaattatgatggtgctctaggacaagatgggtttggtactaatttcttccaaacatattgggaaattatcaaaaaagatg 410  Q
    |  |||| || ||| ||  | |||  ||||||||||| ||| |  ||||| |||||| | |  || || ||||| |  |||||||| |||||  ||||||    
T  1884 aagaatgctgtgtttaagctgaatcctgatggtgctccagggcctgatggatttggtgccaccttttttcaaaccttctgggaaatcatcaaggaagatg 1785  T
Q  411 ttcatgttgccgtaactcaattttttcagaatcgatggcttccttctaattacaatgcaaacattctcattcccatcccccaaaactctaaatgcagata 510  Q
    |  | | ||| |||  |||||| |||||  || ||||||| || || |||||||||||||| |  || || | |||  || || |||| |||||||||||    
T  1784 tgtacgctgcagtagttcaattctttcaatatggatggctgccctccaattacaatgcaaatacgcttatcctcat-tccaaagactccaaatgcagata 1686  T
Q  511 acatagatcaatacaggcctcttgctttagcaaacttaaaattcaagatcataactaaggtactggaagacagactctctcatattctccctaatttgat 610  Q
     |||||||||||| |||||  ||||||| |||||||| ||| ||||||||||||| |||||| ||| ||| |||||||||||  ||||||| ||||||||    
T  1685 gcatagatcaatataggccaattgctttggcaaacttcaaactcaagatcataacaaaggtaatggcagatagactctctcaagttctccccaatttgat 1586  T
Q  611 ttccaaggaataaagagg-attataaggggcgggaatattaaagactgcatagctatcacttccgaagctataaatatgatggatagaagatgttttgga 709  Q
     ||||||||| |||||||  ||||||  ||| | ||||||||||| || || ||||| || || || ||  | ||| || | |||| |||||||||||||    
T  1585 atccaaggaacaaagaggttttataaaaggcagaaatattaaagattgtattgctataacctcagaggcagttaatgtgttagataaaagatgttttgga 1486  T
Q  710 ggtaacttagcaatgaagatagatgtggccaaggaatttggcaccttaagataggattttctattatctgttttgaaaagttttggttttcatccataat 809  Q
    || ||||||||||||||||| ||||| || ||||  |||| ||||||||  | ||| ||| | || ||||| || ||| | ||||| |||||| || |||    
T  1485 gggaacttagcaatgaagattgatgttgcaaaggcttttgacaccttaaactgggaatttatgttgtctgtcttaaaaggatttggatttcattcaaaat 1386  T
Q  810 tttgtagctggattcttgctatactgcagtctcctaacatttcaatctccattaatggtgctcaacatggatactttaaatgtaatata-gtgtcagata 908  Q
    |||| || |||||   | |||| ||||||||  |||| ||||| || || || |||||||||| | | |||||||| |||||||||| | | |||||  |    
T  1385 tttgcagttggatagctactattctgcagtccgctaatatttccatttctatcaatggtgctctaaagggatacttcaaatgtaatagaggggtcaggca 1286  T
Q  909 -agaggtcctctttctcctctccttttctatttagctgaggaagttcttagtagaggtatcaagaaacttgtggatgatgggaaagttgaattaatcaaa 1007  Q
      | |  ||||| ||||||||| | || | | ||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||| ||||||||     
T  1285 gggtgaccctctatctcctctcttgttttgtctagctgaggaagttcttagtagaggcataaagaagcttgtggatgatggaaaggttgatttaatcaag 1186  T
Q  1008 gcttctagaaaagc-catattccttcccaatgtttctatgctgatga 1053  Q
    ||||||||||| ||  ||||||| || || ||||| |||||||||||    
T  1185 gcttctagaaatgcatatattccctcacattgtttttatgctgatga 1139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 23111045 - 23111146
Alignment:
Q  13 ctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaattatt 112  Q
    ||||||||||| | |||||||||| | ||| |||||||||||||||||||| || |||| ||||||||||||| | || |||||||| || |||||||||    
T  23111045 ctggcaggaaaaatctagggttaactggcatttgaatggagacagaaattccaagtattatcacagagttacacaaatcaaaaacaaaactaaaattatt 23111144  T
Q  113 tc 114  Q
    ||    
T  23111145 tc 23111146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 939 - 1053
Target Start/End: Original strand, 23111973 - 23112088
Alignment:
Q  939 ttagctgaggaagttcttagtagaggtatcaagaaacttgtggatgatgggaaagttgaattaatcaaagcttctagaaaagc-catattccttcccaat 1037  Q
    ||||| || ||||| || ||||| |||||||  ||||||||||||||||| |||||  | |||||||| |||||||||  ||| |||||||| || || |    
T  23111973 ttagcagaagaagtcctcagtaggggtatcagaaaacttgtggatgatggtaaagtgaatttaatcaaggcttctagatcagctcatattccctctcatt 23112072  T
Q  1038 gtttctatgctgatga 1053  Q
    |||| | |||||||||    
T  23112073 gtttttttgctgatga 23112088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 14995722 - 14995331
Alignment:
Q  8 attttctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaa- 106  Q
    ||||||||||| || | ||||| |||||  | |||||||||||| || || ||||||||||||||||| ||||||||| | || |||||||| || |||     
T  14995722 attttctggcaagagaaagctaaggttagctggcacttgaatggtgataggaattcaaaatattttcatagagttacacaaatcaaaaacaaaaccaaac 14995623  T
Q  107 --attatttcatctatcagaaacaatgaagaaatgatatctgaacgtcatagaatatcagaacatatggtgaattattgtaataatttgtttgtttctac 204  Q
       ||||| |   ||| ||| ||||||| ||||| || || || | |   ||| | || || || || ||    |||| ||||||||||||| |||| ||    
T  14995622 ttgttattactaatattagacacaatgatgaaatcatttcagatcctttgagagtctctgatcacatagtttcctattataataatttgtttttttccac 14995523  T
Q  205 taacacttttttgcaggaacacttgcttgtagctgaagtaatccctcaaatgattgatgacatcaccaacaatctcctcatcatgaccccaacagaagat 304  Q
    |||| || ||||||||||    ||||| || |  |||||||||||||||||||||||||| |  || |||||||| || |||||||  ||||| |||       
T  14995522 taactctgttttgcaggatattttgctggtggacgaagtaatccctcaaatgattgatgaaacaactaacaatcttcttatcatgattccaactgaatta 14995423  T
Q  305 gaagtcacaaatgttgcgttcaatttcaattatgatggtgctctaggacaagatgggtttggtactaatttcttccaaacatattgggaaat 396  Q
    |||||    |||||||  |||||| | ||| | |||||||||| ||| | |||||| |||||| | | |||||||||||| |||||||||||    
T  14995422 gaagtggagaatgttgttttcaatcttaatcaagatggtgctccagggccagatggttttggtgcaagtttcttccaaacctattgggaaat 14995331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 698 - 736
Target Start/End: Complemental strand, 14995030 - 14994992
Alignment:
Q  698 agatgttttggaggtaacttagcaatgaagatagatgtg 736  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  14995030 agatgctttggaggtaacttagcaatgaagattgatgtg 14994992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 20751644 - 20751560
Alignment:
Q  355 agatgggtttggtactaatttcttccaaacatattgggaaattatcaaaaaagatgttcatgttgccgtaactcaattttttcaga 440  Q
    ||||||||||||| ||  ||||||||||||||| ||||||||| |||| | ||||||   || ||| || ||||||||||||||||    
T  20751644 agatgggtttggtgctgctttcttccaaacatactgggaaattgtcaacacagatgtcattgctgcagt-actcaattttttcaga 20751560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 10800745 - 10800827
Alignment:
Q  44 ttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaattatttcatctatcagaaaca 128  Q
    |||||||| ||||| ||| | |||||||||||  ||||||| || || |||||||| ||||||||||||||  ||||||||||||    
T  10800745 ttgaatggtgacaggaataccaaatattttca--gagttaccaaaatcaaaaacaaaacaaaaattatttccactatcagaaaca 10800827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 22285262 - 22285158
Alignment:
Q  8 attttctggcaggaaatagctagggttaattagcacttgaatggagacagaaattcaaaatattttcacagagttacaaagataaaaaacaagacaaaaa 107  Q
    ||||||||||| || | ||| |||||||  | |||||||||||  || || ||||||||||||||||||||||| ||| | || |||||||| || |||     
T  22285262 attttctggcaagagaaagccagggttagctggcacttgaatgatgataggaattcaaaatattttcacagagtcacacaaatcaaaaacaaaaccaaac 22285163  T
Q  108 ttatt 112  Q
    |||||    
T  22285162 ttatt 22285158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 942 - 1016
Target Start/End: Complemental strand, 22284332 - 22284258
Alignment:
Q  942 gctgaggaagttcttagtagaggtatcaagaaacttgtggatgatgggaaagttgaattaatcaaagcttctaga 1016  Q
    ||||||||||| || |||||||| || || ||| | ||| ||||||| |||||||| ||||| ||||||||||||    
T  22284332 gctgaggaagtgctaagtagaggaattaataaattggtgaatgatggcaaagttgatttaattaaagcttctaga 22284258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 698 - 736
Target Start/End: Complemental strand, 22284578 - 22284540
Alignment:
Q  698 agatgttttggaggtaacttagcaatgaagatagatgtg 736  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  22284578 agatgctttggaggtaacttagcaatgaagattgatgtg 22284540  T

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