View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5242-Insertion-10 (Length: 116)
Name: NF5242-Insertion-10
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (14 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 20297672 - 20297563
Alignment:
| Q |
7 |
atttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataa |
106 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||||||| |||| | || ||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
20297672 |
atttaagagatggaagacatggcattccaagtttagggcatttggagattttcaacttagaaagacaaggaaacatctcccctctttccactttcaataa |
20297573 |
T |
|
| Q |
107 |
cccctctatg |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
20297572 |
cccctctatg |
20297563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 5e-29; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 30243440 - 30243332
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30243440 |
tttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataac |
30243341 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
30243340 |
ccctctatg |
30243332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 30339593 - 30339485
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||| | | |||||| || ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30339593 |
tttaagagatggaagacatggcagtccaattttagggcaataggagattgtcaagttagaaagacaaggaaacatctcccctctttccactttcaataac |
30339494 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
30339493 |
ccctctatg |
30339485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 30434857 - 30434965
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30434857 |
tttaagagatggaagacatggcagtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataac |
30434956 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
30434957 |
ccctctatg |
30434965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 30399099 - 30399208
Alignment:
| Q |
7 |
atttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataa |
106 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||| ||||| | || |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30399099 |
atttaagagatggaagacatggcactccaagtttagggcaagctgtgattctcaactcagaaagacaaggaaacatctcccctctttccactttcaataa |
30399198 |
T |
|
| Q |
107 |
cccctctatg |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
30399199 |
cccctctatg |
30399208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 29852338 - 29852442
Alignment:
| Q |
12 |
agagatggaagacgtggcagtccaagtctagggcatt-tgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataacccc |
110 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| | ||| |||| | ||| ||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29852338 |
agagatggaagacatggcagtccaagttcagggcaatatga-gattttcaaattagaaagacaaggaaatatcttccctctttccactttcaataacccc |
29852436 |
T |
|
| Q |
111 |
tctatg |
116 |
Q |
| |
|
|||||| |
|
|
| T |
29852437 |
tctatg |
29852442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 30059391 - 30059500
Alignment:
| Q |
7 |
atttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || |||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30059391 |
atttaagagatggaagacatggcagtccaagtttacggcattcagagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataa |
30059490 |
T |
|
| Q |
107 |
cccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
30059491 |
accctctatg |
30059500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 29871221 - 29871329
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||| || ||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
29871221 |
tttaagagatggaagacatggcagtccaattttagggcatttccaaatatccaaactagaaagacaaggaaacatctcccctctttcaactttcaataaa |
29871320 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
29871321 |
ccctctatg |
29871329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 30678180 - 30678128
Alignment:
| Q |
64 |
tagaaagacgaggaaacatctcccctctttccactttcaataacccctctatg |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30678180 |
tagaaagacaaggaaacatctcccctctttccactttcaataacccctctatg |
30678128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 30482496 - 30482547
Alignment:
| Q |
65 |
agaaagacgaggaaacatctcccctctttccactttcaataacccctctatg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30482496 |
agaaagacaaggaaacatctcccctctttccactttcaataacccctctatg |
30482547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 30748677 - 30748786
Alignment:
| Q |
7 |
atttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| | ||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30748677 |
atttaagagatggaagacatggcagtccaagttcagggcaatcccagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataa |
30748776 |
T |
|
| Q |
107 |
cccctctatg |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
30748777 |
tccctctatg |
30748786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 4380693 - 4380801
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| || ||| || ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4380693 |
tttaagagatggatgacatggcagtccaagtttagggcaattctagatatccaagttagaaagacaaggaaacaactcccctctttccactttcaataac |
4380792 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
|||| |||| |
|
|
| T |
4380793 |
ccctttatg |
4380801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 30714502 - 30714394
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30714502 |
tttaagagatggaagacatggcagtccaagtttagggcaacaatcgattaccaatttagaaagagaaggaaacatctcccctctttccactttcaataac |
30714403 |
T |
|
| Q |
108 |
ccctctatg |
116 |
Q |
| |
|
||| ||||| |
|
|
| T |
30714402 |
cccactatg |
30714394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 30205545 - 30205651
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||| | ||| || ||| |||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
30205545 |
tttaagagatacaagacatggcagtccaagtttagggcaaaaggagatggttaaacgagaaagacaaggaaacatctcacctctttccactttcaataac |
30205644 |
T |
|
| Q |
108 |
ccctcta |
114 |
Q |
| |
|
|| |||| |
|
|
| T |
30205645 |
ccttcta |
30205651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 30203244 - 30203280
Alignment:
| Q |
67 |
aaagacgaggaaacatctcccctctttccactttcaa |
103 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
30203244 |
aaagacaaggaaacatctcctctctttccactttcaa |
30203280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 26706366 - 26706475
Alignment:
| Q |
7 |
atttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataa |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||| | | ||||| ||| |||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
26706366 |
atttaagagatggaagacatggcagtcctagcttagggcaatagtatattgtcaaacgagaaagacaaggaaacacctttcctctttccactttcaataa |
26706465 |
T |
|
| Q |
107 |
cccctctatg |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
26706466 |
cccctctatg |
26706475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7582796 - 7582690
Alignment:
| Q |
8 |
tttaagagatggaagacgtggcagtccaagtctagggcatttgatgattgtgaaagtagaaagacgaggaaacatctcccctctttccactttcaataac |
107 |
Q |
| |
|
||||| ||||||||||| || ||| ||||| ||||||| ||| |||| | ||| ||||||||| ||||||||||||| | ||||||||||||| ||| |
|
|
| T |
7582796 |
tttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcctttttttccactttcaacaac |
7582697 |
T |
|
| Q |
108 |
ccctcta |
114 |
Q |
| |
|
||||||| |
|
|
| T |
7582696 |
ccctcta |
7582690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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