View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5242-Insertion-2 (Length: 980)
Name: NF5242-Insertion-2
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 34451435 - 34451893
Alignment:
| Q |
14 |
caacgtcattaacaatacttgatatgttttgatagtggtgtttataaattgtaccgaaataatagagaagtaacaatgtccttgagatataaataaacag |
113 |
Q |
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| T |
34451435 |
caacgtcattaacaatacttgatatgttttgatagtggtgtttataaattgtaccgaaataatagagaagtaacaatgtccttgagatataaataaacag |
34451534 |
T |
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| Q |
114 |
agaataagggttgaatctgttggagtaatattctcatagtttgttaccttactctgttttcaaattcaaattgtaaatcatattccagtattgatgtact |
213 |
Q |
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| T |
34451535 |
agaataagggttgaatctgttggagtaatattctcatagtttgttaccttactctgttttcaaattcaaattgtaaatcatattccagtattgatgtact |
34451634 |
T |
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| Q |
214 |
ttgaaatttcatcaatgaattgaatcatttatattcacgttatcagccttctaattcgtttagtcgcaaattgatcccatgaaactgctatttttctttt |
313 |
Q |
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| T |
34451635 |
ttgaaatttcatcaatgaattgaatcatttatattcatgttatcagccttctaattcgtttagtcgcaaattgatcccatgaaactgctatttttcttct |
34451734 |
T |
|
| Q |
314 |
gtacgagagcaaataagtgaagcactaaggtaaccatgtgtactactgtggaaaaggataacaatgtatcatatttaattaaactgatttgatacttttg |
413 |
Q |
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| T |
34451735 |
gtacgagagcaaataagtgaagcactaagttaaccatgtgtactactgtggaaaaggataacaatgtttcatatttaattaaactgctttgatacttttg |
34451834 |
T |
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| Q |
414 |
aaattataaaatataatggcttggactaatttaaaataagatgagagtaatattagtag |
472 |
Q |
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| T |
34451835 |
aaattataaaatataatggcttgtactaatttaaaataagatgagagtaatattagtag |
34451893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 544 - 937
Target Start/End: Original strand, 34451976 - 34452367
Alignment:
| Q |
544 |
atgaggcatgatatatttgaaacttttgaaatatattgtaacaggaggtcataatgctatgcaatgttacaagctcaagaggaatctgtgtaagtcacca |
643 |
Q |
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| T |
34451976 |
atgaggcatgatatatttgaaacttttgaaatatattgtaacaggaggtcataatgctatgcaatgttacaagctcaagaggaatctgtgtaagtcacca |
34452075 |
T |
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| Q |
644 |
caatccactgcaaatgttgtccaaatcagtactcctccttcgggaatggctctttgattctgaagcatctcaccatattataaatggcttaaacaatctc |
743 |
Q |
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| T |
34452076 |
caatccactgcgaatgttgtccaaatcagtactcctccttcgg-aatggctctttgattctgaagcatctcaccatattacaaatggcttaaataatctc |
34452174 |
T |
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| Q |
744 |
ttcatcaagaatgataacacttgttctaatcagttgcatgttgccaatagtaataaacttcatatatctcatttcagatgtatcattattcctactaatc |
843 |
Q |
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| T |
34452175 |
ttcatcaagaatgataacacttgttctaatcagttgcatgttgccaatagtaataaacttcatatatctcatttcagatgtatcattattcctactaatc |
34452274 |
T |
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| Q |
844 |
gcaaacctct-aaattattggatgtcttgcgtgtcctttgaagtcacacaaaaatttagtttcagtttcacagttatgtgaatctaacaacgtgt |
937 |
Q |
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| T |
34452275 |
gcaaacctctaaaattattgaatgtcttgcgtgtcc-ttgaagtcacac-aaaatttagtttcagtttcacaattatgtgaatctaacaacgtgt |
34452367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 34441671 - 34441765
Alignment:
| Q |
93 |
ccttgagatataaataaacagagaata--agggttgaatctgttggagtaatattctcatagtttgttaccttactctgttttcaaattcaaatt |
185 |
Q |
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| T |
34441671 |
ccttgagatataaataagcagagaatataagggttgagttttttggagtaatattctcatagtttgttattgtaatctattttcaaattcaaatt |
34441765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 34441841 - 34441931
Alignment:
| Q |
204 |
ttgatgtactttgaaatttcatcaatgaattgaatcatttatattcacgttatcagccttctaattcgtttagtcgcaaattgatcccatga |
295 |
Q |
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| T |
34441841 |
ttgatgtactttgaa-tgtaatcaatgaactgaatcatttatattcatggtatcaaccttctaattcttttaattgcaaattgataccatga |
34441931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 34467988 - 34468042
Alignment:
| Q |
227 |
aatgaattgaatcatttatattcacgttatcagccttctaattcgtttagtcgca |
281 |
Q |
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| T |
34467988 |
aatgaattgaatcatttacattaatggtatcaaccttctaattcgtttaatcgca |
34468042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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