View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5242-Insertion-3 (Length: 587)
Name: NF5242-Insertion-3
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Complemental strand, 3477417 - 3476838
Alignment:
| Q |
8 |
attatcatcatcatcaatcagagaaatgtgtgacagattcaattcacaaagatggtagaaagattcccatgaatctcatgcaatttccagcaatcttaat |
107 |
Q |
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| T |
3477417 |
attatcatcatcatcaatcggagaaatgtgtgacaaattcaattcaccaagatggtagaaagattcccatgaatctcatgcaatttccagcaaccttaat |
3477318 |
T |
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| Q |
108 |
catccaccaactcacaaactctagttaatctaatcttatcatcatgtcacttatcaacaaccacaatactnnnnnnntacttgataaatgtttggattga |
207 |
Q |
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| T |
3477317 |
cattcaccaactcacaaactctagttaatctaatcttatcatcatgtcacttatcaacaaccacaatactaaaaaaatacttgataactgtttggattga |
3477218 |
T |
|
| Q |
208 |
cagtaattaaatttgtcataatacggtgagcctgtgtgattttctaagcctgtgtgattttttataaaaactgcactttgtagcttcaacaaaatcatgg |
307 |
Q |
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| T |
3477217 |
cagtaattaaatttgtcataatacggtgagcctgtgtgattttttaagcctgtgtgattttttataaaaactacactttgtagcttcaacaaaatcatgg |
3477118 |
T |
|
| Q |
308 |
tgctacaataattttgccaaacttattgctcatccaaacatacactcactcacacttacgttacacagcaaaactagtaacatgtagagttttgtgttgc |
407 |
Q |
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| T |
3477117 |
tgctacaataattttgccaaacttattgctcatccaaacatacactcactcaaacttacgttacacaacaaaactagtaacatgtagagttttgtgttgc |
3477018 |
T |
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| Q |
408 |
cagttattatcatcaaatcaaaaaacccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaacttcaacaattaacaatttcctaa |
507 |
Q |
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| T |
3477017 |
cagttattatcatcaaatcaaaaaccccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaacttcaacaattaacaatttcctaa |
3476918 |
T |
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| Q |
508 |
caagtcatgatacttaaatagatacaataacattctatgaatatgaatagtatagatagaaactaatacaaaacaacaaa |
587 |
Q |
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| T |
3476917 |
caagccatgatactcaaataaatacaataacattctatgaatatgaatagtatagatagaaactaatacaaaacaacaaa |
3476838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 575
Target Start/End: Complemental strand, 16751 - 16200
Alignment:
| Q |
11 |
atcatcatcatcaatcagagaaatgtgtgacagattcaattcacaaagatggtagaaagattcccatgaatctcatgcaatttccagcaatcttaatcat |
110 |
Q |
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| T |
16751 |
atcatcatcatcaatcggagaaatgtgtgacaaattcaattcacaaagagggtagaaagattcccatgaatctcatgcaatttccagcaaccttaatcat |
16652 |
T |
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| Q |
111 |
ccaccaactcacaaactctagttaatctaatcttatcatcatgtcacttatcaacaaccacaatactnnnnnnntacttgataaatgtttggattgacag |
210 |
Q |
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| T |
16651 |
tcaacaactcagaaactctagttaatctaatctcatcatcgtgtcacttatcaacaaccacaatactcaaaaaatacttgataaatgtttggattgacag |
16552 |
T |
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| Q |
211 |
taattaaatttgtcataatacggtgagcctgtgtgattttctaagcctgtgtgattttttataaaaactgcactttgtagcttcaacaaaatcatggtgc |
310 |
Q |
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| T |
16551 |
taattaaatttgtcataatacggtgagcatgtgtgatatt------------------ttataaaaactacactttgtagcttcaacaaaattatggggc |
16470 |
T |
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| Q |
311 |
tacaataattttgccaaacttattgctcatccaaacatacactcactcacactt--acgttacacagcaaaactagtaacatgtagagttttgtgttgcc |
408 |
Q |
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| T |
16469 |
tacaataattttgccaaacttattgctcatccaaacatacactcactcacacttgcacgttacacaacaaaactagtaacatgtagagttttgtgttgca |
16370 |
T |
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| Q |
409 |
agttattatcatcaaatcaaaaaacccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaacttcaacaattaacaatttcctaac |
508 |
Q |
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| T |
16369 |
agttattatcatcaaatcaaaaaccccatcaaacaaacaactacaataaacctcaattcacaaggtactgctaaacttcaacaattaacaatttcctaac |
16270 |
T |
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| Q |
509 |
aagtcatgatacttaaatagatacaat---aacattctatgaatatgaatagtatagatagaaactaata |
575 |
Q |
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| T |
16269 |
aagccatgatactcaaataaatacaataacaacattctatgaatatgaatagtatagatagaaactaata |
16200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 50229996 - 50230033
Alignment:
| Q |
273 |
aaaaactgcactttgtagcttcaacaaaatcatggtgc |
310 |
Q |
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||||||| ||||||||||||||||||||||||| |||| |
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| T |
50229996 |
aaaaactacactttgtagcttcaacaaaatcatagtgc |
50230033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 10734613 - 10734577
Alignment:
| Q |
273 |
aaaaactgcactttgtagcttcaacaaaatcatggtg |
309 |
Q |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
10734613 |
aaaaactgcactttggagcttcaacaaaatcacggtg |
10734577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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