View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5242_low_2 (Length: 532)
Name: NF5242_low_2
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 513
Target Start/End: Original strand, 39508115 - 39508597
Alignment:
| Q |
30 |
ctccctcaatagaaacaaaacaagaacaaccaaattagtacatattgccacaagctccaaaagaggcaatccaaggatcttactgaaaagggtattccac |
129 |
Q |
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| T |
39508115 |
ctccctcaatagaaacaaaacaagaacagccaaattagtacatattgcaacaagctccaaaacaggcaatccaaggatcttactgaaaagggtattccac |
39508214 |
T |
|
| Q |
130 |
aatgacccttttgaagaatacaacgttgtaggcaagatttcattgagagccatgaggaaaaagatgatttatgagaagaatattgagtcggtgtgaataa |
229 |
Q |
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| T |
39508215 |
aatgacccttttgaagaatacaacgttgtaggcaagatttcattgagagccatgaggaaaaagatgatttatgagaagaatattgagtcggtgtgaataa |
39508314 |
T |
|
| Q |
230 |
gaagatgaagaagtgaaagagagtagtaacgaaaagcaaaagcaagtgatgtcatcaaaagcaggtactaagaatgaagaacatatttgcaccatgtgga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39508315 |
gaagatgaagaagtgaaagagagtagtaacgaaaagcaaaagcaagtgatgtcatcaaaagcaggtactaagaatgaagaacatttttgcaccatgtgga |
39508414 |
T |
|
| Q |
330 |
gttagattctgtgtgacacattgcacgttaaaacaaaagaggtttaaattcatcagcatcaaacacgaaacacgaagaacagaaagnnnnnnntaagagt |
429 |
Q |
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| T |
39508415 |
gttagattctgtgtgacacattgcacgttgaaacaaaagaggttt-aattcatcagcatcaaacacgaaacacgaagaacagaaagaaaaaaataagagt |
39508513 |
T |
|
| Q |
430 |
ttgcagctgcaaagagacaaaaagggtatgattattaaggaatcaaaattaaaattctatacaaacctgaatttttgctattag |
513 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39508514 |
ttgcagctacaaagagacaaaaagggtatgattattaaggaatcaaaattaaaattctatacaaacctgaatttttgctcttag |
39508597 |
T |
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