View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5242_low_3 (Length: 517)
Name: NF5242_low_3
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 44333183 - 44332941
Alignment:
| Q |
18 |
aattttacaaattacctaattgaactgtgaggatgtgataacatgtttatcggtttatgcaattgaagttgagattacctgattgaagtgtgtgatttct |
117 |
Q |
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| T |
44333183 |
aattttacaaattacctaattgaactgtgaggatgcgataacatgtttatcggtttatgcaattgaagttgagattacctgattgaagtgtgtgatttct |
44333084 |
T |
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| Q |
118 |
acaccctcagttgccaagccatcatctttaccatctaaaaaatggaaaacatcagccattaaattttgggtgtccaattcaaatggttatgaagcatatt |
217 |
Q |
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| T |
44333083 |
acaccctcagttgccaagccatcatctttaccatctaaaaaatggaaaacatcagccattaaattttgggtgtccaattcaaatggttatgaagcatatt |
44332984 |
T |
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| Q |
218 |
atcactttagaattccctaattataatgagtatgataagtatg |
260 |
Q |
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| T |
44332983 |
atcactttagaattccctaattataatgagtatgataagtatg |
44332941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 318 - 507
Target Start/End: Complemental strand, 44332883 - 44332689
Alignment:
| Q |
318 |
gtagggctatatcgccatcagagagttcagaggtggcttcgaacccaaagcgaggtgaataaatagaagggacaggctctgactaggatgtatccaaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44332883 |
gtagggctatatcgccatcagagagttcagaggtggcttcgaacccaaagcgaggtgaataaatagaagggacaggctctgactaggatgtatccaaaca |
44332784 |
T |
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| Q |
418 |
atttcaag-ttttagtgatcaactgatcagatataatgtcaaaagcatgatgtaattagcacccataaac----tatagaatctcaacagtatta |
507 |
Q |
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| T |
44332783 |
atttcaagcttttagtgatcaactgatcagatataatgtcaaaagcatgatgtaattagcacccataaactatatatagaatctcaacagtatta |
44332689 |
T |
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