View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5242_low_4 (Length: 260)
Name: NF5242_low_4
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5242_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 40383916 - 40384160
Alignment:
| Q |
1 |
atcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcagcgttgcgg |
100 |
Q |
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| T |
40383916 |
atcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcagcgttgcgg |
40384015 |
T |
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| Q |
101 |
agaccgagctggtcgatgagtgcttggacacgagcttttttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgagagtttctt |
200 |
Q |
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| T |
40384016 |
agaccgagctggtcgatgagtgcttggacacgagcttttttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgagagtttctt |
40384115 |
T |
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| Q |
201 |
ccacggtgagcatggggaagagaagatcgtcttgcatgacataag |
245 |
Q |
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| T |
40384116 |
ccacggtgagcatggggaagagaagatcgtcttgcatgacataag |
40384160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 52375198 - 52374995
Alignment:
| Q |
40 |
ttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcagcgttgcggagaccgagctggtcgatgagtgcttggacacgagctttt |
139 |
Q |
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| T |
52375198 |
ttctccaccagagactccacggtgaccttcgtctccgataactgttttcgctgcgttgcggagtcctagttgatcaatcaaagcttgaacacgagcgttt |
52375099 |
T |
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| Q |
140 |
ttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgagagtttcttccacggtgagcatggggaagagaagatcgtcttgcatga |
239 |
Q |
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| T |
52375098 |
ttctttgattttgagagtgatcgcggtaatcggaattcagctgcaaaggtgagagtttcttcaactgtgagcattggaaagaggagatcatcttgcatca |
52374999 |
T |
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| Q |
240 |
cata |
243 |
Q |
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|||| |
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| T |
52374998 |
cata |
52374995 |
T |
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