View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5242_low_5 (Length: 251)

Name: NF5242_low_5
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5242_low_5
NF5242_low_5
[»] chr5 (15 HSPs)
chr5 (72-184)||(30058578-30058695)
chr5 (72-156)||(30340018-30340102)
chr5 (72-156)||(30748183-30748267)
chr5 (90-156)||(30243853-30243919)
chr5 (90-156)||(30434380-30434446)
chr5 (88-156)||(30481888-30481956)
chr5 (88-156)||(30058853-30058921)
chr5 (198-251)||(30058739-30058792)
chr5 (88-156)||(29870742-29870810)
chr5 (206-251)||(29870636-29870681)
chr5 (88-156)||(30714565-30714633)
chr5 (206-251)||(30481782-30481827)
chr5 (88-156)||(30678721-30678790)
chr5 (206-248)||(29851725-29851767)
chr5 (94-155)||(29851863-29851925)
[»] chr7 (1 HSPs)
chr7 (88-156)||(26705817-26705885)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 30058578 - 30058695
Alignment:
Q  72 gtgaattgaggcagataaggggaaatagagatcttaccagtaaa----attgaattttgcgatggtgattgaggc-agataagggtaaacaacatacgag 166  Q
    ||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  30058578 gtgaattgaggcagataaggggaaatagagatcttaccagttaagtgaattgaattttgcgatggtgatcgaggccagataagggtaaacaacatacgag 30058677  T
Q  167 taatcagacttgctaatc 184  Q
    ||||||||||||||||||    
T  30058678 taatcagacttgctaatc 30058695  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 30340102 - 30340018
Alignment:
Q  72 gtgaattgaggcagataaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340102 gtgaattgaggcagataaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 30340018  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 30748183 - 30748267
Alignment:
Q  72 gtgaattgaggcagataaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30748183 gtgaattgaggcaaataaggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagataagggtaaac 30748267  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 30243919 - 30243853
Alignment:
Q  90 ggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30243919 ggggaaatagagatcctaccagtaaaattgatttttgcgatggtgattgaggcagataagggtaaac 30243853  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 30434380 - 30434446
Alignment:
Q  90 ggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||    
T  30434380 ggggaaatagagatcctaccagtaaaatagatttttgcgatggtgattgaggcagataagggtaaac 30434446  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30481888 - 30481956
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  30481888 aaggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagataagggtaaac 30481956  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30058853 - 30058921
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  30058853 aaggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagataagggtaaac 30058921  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 30058739 - 30058792
Alignment:
Q  198 ttaggtagaatatcattcatgtactctggatctcttcctgcggaatgggttcca 251  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30058739 ttaggtagaatatctttcatgtactctggatctcttcctgcagaatgggttcca 30058792  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 29870742 - 29870810
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    |||||||||| |||||| ||| ||||||||||| |||||||||| |||||| |||||||||||||||||    
T  29870742 aaggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagataagggtaaac 29870810  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 29870636 - 29870681
Alignment:
Q  206 aatatcattcatgtactctggatctcttcctgcggaatgggttcca 251  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  29870636 aatatctttcatgtactctggatctcttcctgcggaatgggttcca 29870681  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 30714633 - 30714565
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    ||||| ||||||||||| ||||||||||||||| ||||| |||||  | ||||||||||||||||||||    
T  30714633 aagggtaaatagagatcctaccagtaaaattgatttttgtgatggctaatgaggcagataagggtaaac 30714565  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 30481782 - 30481827
Alignment:
Q  206 aatatcattcatgtactctggatctcttcctgcggaatgggttcca 251  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  30481782 aatatctttcatgtagtctggatctcttcctgcggaatgggttcca 30481827  T

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Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 30678790 - 30678721
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagat-aagggtaaac 156  Q
    |||||||||| |||||| ||||||||||||  | |||||||||||||||| |||||||| ||||||||||    
T  30678790 aaggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcagataaagggtaaac 30678721  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 29851725 - 29851767
Alignment:
Q  206 aatatcattcatgtactctggatctcttcctgcggaatgggtt 248  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  29851725 aatatcattcatgtaccctggatctcttcctacggaatgggtt 29851767  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 29851863 - 29851925
Alignment:
Q  94 aaatagagatcttaccagtaaaattgaattttgcgatggtgattgagg-cagataagggtaaa 155  Q
    ||||||||| | |||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  29851863 aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagataagggtaaa 29851925  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 26705817 - 26705885
Alignment:
Q  88 aaggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaac 156  Q
    ||||||||| ||||||| ||||| |||||| || ||||| |||||||||||||||||||||||||||||    
T  26705817 aaggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagataagggtaaac 26705885  T

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