View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5242_low_7 (Length: 238)

Name: NF5242_low_7
Description: NF5242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5242_low_7
NF5242_low_7
[»] chr5 (19 HSPs)
chr5 (30-238)||(29852121-29852326)
chr5 (40-238)||(29871008-29871203)
chr5 (18-238)||(30243436-30243653)
chr5 (18-238)||(30339589-30339806)
chr5 (40-238)||(30482226-30482421)
chr5 (42-238)||(30434644-30434837)
chr5 (37-238)||(30748465-30748663)
chr5 (25-181)||(30398944-30399097)
chr5 (31-172)||(30059245-30059383)
chr5 (40-187)||(30678257-30678401)
chr5 (194-238)||(30059110-30059154)
chr5 (194-238)||(30678477-30678521)
chr5 (40-85)||(4380630-4380675)
chr5 (197-238)||(4380486-4380527)
chr5 (118-171)||(30205399-30205452)
chr5 (30-86)||(30205481-30205537)
chr5 (38-88)||(30203119-30203169)
chr5 (22-87)||(29709977-29710042)
chr5 (18-69)||(30474363-30474414)
[»] chr4 (3 HSPs)
chr4 (40-187)||(20297689-20297836)
chr4 (194-238)||(20297912-20297956)
chr4 (118-171)||(20303720-20303773)
[»] chr7 (1 HSPs)
chr7 (40-178)||(26706214-26706349)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 29852326 - 29852121
Alignment:
Q  30 atgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatcctt 129  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||    |||   ||||||||||    
T  29852326 atgtattgggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggtttcagaa---taacatcctt 29852230  T
Q  130 cccagaggggatgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaattgggaaggtctt 229  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  29852229 cccagaggagatgttcaaaaaccttacttctcttcaatctctggttgtaaattgtttcccacaattggagtccttaccagagcaaaattgggaaggtctt 29852130  T
Q  230 caatccctt 238  Q
    |||||||||    
T  29852129 caatccctt 29852121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 29871203 - 29871008
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagagggg 139  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||   |||  |||| |||||||||   ||||||||||||||||||||    
T  29871203 atgtaacaatgagttactgaggtcaatctctaccttttgtggtcttactcagcttgccctaagtgacggtgaaggaa---taacatccttcccagagggg 29871107  T
Q  140 atgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29871106 atgttcaaaaaccttacttctcttctatctctgtttgtatattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatccctt 29871008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 30243436 - 30243653
Alignment:
Q  18 ttaaagacctctatgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaac 117  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||  | || ||   ||||     
T  30243436 ttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaaactaattcacggtttcggaa- 30243534  T
Q  118 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaat 217  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||  ||||    
T  30243535 --taacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtctgtaaatagtttcccacaattggagtccttaccagagacaaat 30243632  T
Q  218 tgggaaggtcttcaatccctt 238  Q
    |||||||||||||||||||||    
T  30243633 tgggaaggtcttcaatccctt 30243653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 30339589 - 30339806
Alignment:
Q  18 ttaaagacctctatgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaac 117  Q
    ||||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    || ||||  |||||||       
T  30339589 ttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatgaaggtgaagg--- 30339685  T
Q  118 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |||    | | ||||||||||||||||||||||||    
T  30339686 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtctatcattagttgtaatgagttggagtccttaccagagcaaaat 30339785  T
Q  218 tgggaaggtcttcaatccctt 238  Q
    |||||||||||||||||||||    
T  30339786 tgggaaggtcttcaatccctt 30339806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 30482421 - 30482226
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagagggg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||   ||  |||||||||   ||||||||||||||||||||    
T  30482421 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaatggagggtgaaggaa---taacatccttcccagagggg 30482325  T
Q  140 atgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    ||||||||||||||||||| |||||||| ||||   ||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482324 atgttcaaaaaccttacttgtcttcaatatctggaagtagattggttcccacaattggagtccttaccagagcaaaattgggaaggtcttcaatccctt 30482226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 30434837 - 30434644
Alignment:
Q  42 gtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagaggggat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| ||    |||||||||   |||||||||| ||||||| |||    
T  30434837 gtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaaggaa---taacatccttaccagaggagat 30434741  T
Q  142 gttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    ||||||||||||||||||||||||||| |||||||||| || |||  | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  30434740 gttcaaaaaccttacttctcttcaatccctgtttgtaacttttttaccacaattggagtccttaccagagcaaaactgggaaggtcttcaatccctt 30434644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 30748663 - 30748465
Alignment:
Q  37 ggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagag 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| ||    |||||||   |||||||||||| ||||||    
T  30748663 ggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagag 30748567  T
Q  137 gggatgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatccc 236  Q
    | ||||||||||||||||||||||||||||||||||| | | |||||||    | | ||||||||||||||||||||||| |||||||||||||||||||    
T  30748566 gagatgttcaaaaaccttacttctcttcaatctctgtgtatcaattgttgtaatgagttggagtccttaccagagcaaaactgggaaggtcttcaatccc 30748467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 30399097 - 30398944
Alignment:
Q  25 cctctatgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataaca 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||| || || ||  |||   |||||||    
T  30399097 cctctatgtattgggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagagg---aataaca 30399001  T
Q  125 tccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgtttgtaaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  30399000 tccttcccagaggggatgttcaaaaaccttacttctcttcaatcactggttgtaaat 30398944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 30059383 - 30059245
Alignment:
Q  31 tgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttc 130  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   || |||   |||||||   |||||||||||||    
T  30059383 tgtatcggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatgggggtgaagg---aataacatccttc 30059287  T
Q  131 ccagaggggatgttcaaaaaccttacttctcttcaatctctg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30059286 ccagaggggatgttcaaaaaccttacttctcttcaatctctg 30059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 30678257 - 30678401
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagagggg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| || || ||   ||||   ||||||||||||||||||||    
T  30678257 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagctttccctatataacggtttcggaa---taacatccttcccagagggg 30678353  T
Q  140 atgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttc 187  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  30678354 atgttcaaaaaccttacttctcttcaatctctgtctgtaaatggtttc 30678401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 30059154 - 30059110
Alignment:
Q  194 ttggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30059154 ttggagtccttaccagagcaaaattgggaaggtcttcaatccctt 30059110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 30678477 - 30678521
Alignment:
Q  194 ttggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30678477 ttggagtccttaccagagcaaaattgggaaggtcttcaatccctt 30678521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 4380675 - 4380630
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 85  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  4380675 atgtaacaatgagttactgaggtcaatctctacctttcgtggtctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 4380527 - 4380486
Alignment:
Q  197 gagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  4380527 gagtccttaccagagcaaaattgagaaggtcttcaatccctt 4380486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 30205452 - 30205399
Alignment:
Q  118 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct 171  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||| ||||    
T  30205452 aataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct 30205399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 30205537 - 30205481
Alignment:
Q  30 atgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtctta 86  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||  |||||||||    
T  30205537 atgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtggtctta 30205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 30203169 - 30203119
Alignment:
Q  38 gaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttact 88  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||||||    
T  30203169 gaatgtaacaatgagttactgaggtcgatctctagcttctatggtcttact 30203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 29709977 - 29710042
Alignment:
Q  22 agacctctatgtattggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 87  Q
    ||||||| |||| | || ||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709977 agacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30474414 - 30474363
Alignment:
Q  18 ttaaagacctctatgtattggaatgtaacaatgagttactgaggtcaatctc 69  Q
    |||||||||||  |||||| | ||||||||||||||||||||| ||||||||    
T  30474414 ttaaagacctcattgtatttggatgtaacaatgagttactgagatcaatctc 30474363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 40 - 187
Target Start/End: Original strand, 20297689 - 20297836
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagagggg 139  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||  |||| |||| |||||| || |||||||||||||||||| |||    
T  20297689 atgtaacaatgagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatggg 20297788  T
Q  140 atgttcaaaaaccttacttctcttcaatctctgtttgtaaattgtttc 187  Q
    |||||||||||||||||||||||||||||| || || |||||| ||||    
T  20297789 atgttcaaaaaccttacttctcttcaatctttggttttaaattatttc 20297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 20297912 - 20297956
Alignment:
Q  194 ttggagtccttaccagagcaaaattgggaaggtcttcaatccctt 238  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  20297912 ttggagtccttaccagagcaaatttgggaaggtcttcaatccctt 20297956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
Q  118 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct 171  Q
    |||||||||||||| | |||||||||||| ||||||||||| ||||||| ||||    
T  20303720 aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct 20303773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 26706349 - 26706214
Alignment:
Q  40 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactctgctttggctacatgaccgtgaaggaacaataacatccttcccagagggg 139  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||  ||||   ||| || || | |||||||   ||||||||||||||||||||    
T  26706349 atgtaacaatgagttactgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaaggaa---taacatccttcccagagggg 26706253  T
Q  140 atgttcaaaaaccttacttctcttcaatctctgtttgta 178  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26706252 atgttcaaaaaccttacttctcttcaatctctgtttgta 26706214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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