View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243-Insertion-10 (Length: 321)
Name: NF5243-Insertion-10
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243-Insertion-10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 179880 - 180194
Alignment:
| Q |
8 |
catacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaa |
107 |
Q |
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| T |
179880 |
cataagatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcacgttcaaattgtctagcaaaaa |
179979 |
T |
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| Q |
108 |
ttttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatc |
206 |
Q |
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| T |
179980 |
ttttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatc |
180079 |
T |
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| Q |
207 |
aacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgaca |
306 |
Q |
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| T |
180080 |
aacaacggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaaaggctgaca |
180179 |
T |
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| Q |
307 |
tcatctcctttgctt |
321 |
Q |
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| T |
180180 |
tcatctcctttgctt |
180194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 1700270 - 1700578
Alignment:
| Q |
11 |
acgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattt |
110 |
Q |
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| T |
1700270 |
acgatcctattttcaaca---tggccaccaacccttccaacaccaaatcatctcttattctaaatgcctcaatcacgttcaaactgtctcgcaaaaattt |
1700366 |
T |
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| Q |
111 |
tcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaac |
209 |
Q |
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| T |
1700367 |
ccgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaac |
1700466 |
T |
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| Q |
210 |
aatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatca |
309 |
Q |
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| T |
1700467 |
aacggtgtctctgctcccaatcctgattacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacagca |
1700566 |
T |
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| Q |
310 |
tctcctttgctt |
321 |
Q |
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| T |
1700567 |
tctcctttgctt |
1700578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 5399261 - 5399324
Alignment:
| Q |
235 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaga |
298 |
Q |
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| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacaga |
5399324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 3540258 - 3540321
Alignment:
| Q |
235 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaga |
298 |
Q |
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| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacaga |
3540321 |
T |
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