View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243-Insertion-15 (Length: 95)
Name: NF5243-Insertion-15
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243-Insertion-15 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 9230997 - 9230908
Alignment:
| Q |
6 |
caccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatcttg |
95 |
Q |
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| T |
9230997 |
caccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttg |
9230908 |
T |
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Target: chr4 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 18351591 - 18351680
Alignment:
| Q |
6 |
caccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatcttg |
95 |
Q |
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| T |
18351591 |
caccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggatatctcgttcagacacatcttg |
18351680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 9e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-27
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 7999436 - 7999348
Alignment:
| Q |
6 |
caccattgatatcgacccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatctt |
94 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| || ||||| ||||| |
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| T |
7999436 |
caccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggatatctcgtttagacaaatctt |
7999348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 2915030 - 2915103
Alignment:
| Q |
20 |
acccatctgagggagttcttcgttttaatccttatccctcttcttgttaccggatctctctttcagacacatctt |
94 |
Q |
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| T |
2915030 |
acccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttcag-cacatctt |
2915103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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