View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243-Insertion-5 (Length: 606)

Name: NF5243-Insertion-5
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243-Insertion-5
NF5243-Insertion-5
[»] chr6 (5 HSPs)
chr6 (5-606)||(27095855-27096456)
chr6 (551-606)||(15081671-15081726)
chr6 (556-606)||(19247354-19247402)
chr6 (421-464)||(2165527-2165570)
chr6 (421-464)||(2177160-2177203)
[»] chr2 (6 HSPs)
chr2 (415-511)||(41072982-41073079)
chr2 (410-513)||(373192-373296)
chr2 (415-502)||(28716572-28716656)
chr2 (419-454)||(10877706-10877741)
chr2 (446-521)||(17286648-17286723)
chr2 (469-502)||(374536-374569)
[»] chr8 (4 HSPs)
chr8 (428-512)||(13035090-13035174)
chr8 (415-517)||(15901389-15901493)
chr8 (469-517)||(29916322-29916370)
chr8 (469-501)||(33709154-33709186)
[»] chr5 (6 HSPs)
chr5 (415-512)||(43222070-43222168)
chr5 (410-500)||(35650274-35650365)
chr5 (410-505)||(2582385-2582481)
chr5 (410-461)||(9465739-9465790)
chr5 (415-502)||(14733510-14733597)
chr5 (556-594)||(20495081-20495119)
[»] chr3 (5 HSPs)
chr3 (410-512)||(32577466-32577568)
chr3 (415-522)||(33338204-33338311)
chr3 (410-521)||(48950545-48950657)
chr3 (418-457)||(28229438-28229477)
chr3 (43-101)||(38927636-38927694)
[»] chr7 (7 HSPs)
chr7 (556-606)||(7324371-7324421)
chr7 (419-512)||(18118537-18118631)
chr7 (419-460)||(676059-676100)
chr7 (562-606)||(8612632-8612676)
chr7 (422-512)||(30760293-30760384)
chr7 (415-512)||(20399996-20400094)
chr7 (415-457)||(26826072-26826114)
[»] scaffold0417 (1 HSPs)
scaffold0417 (551-606)||(5602-5657)
[»] chr1 (8 HSPs)
chr1 (439-521)||(42720586-42720668)
chr1 (415-460)||(24413315-24413360)
chr1 (421-521)||(36700860-36700961)
chr1 (421-521)||(36716964-36717065)
chr1 (443-512)||(22536737-22536807)
chr1 (415-457)||(26768895-26768937)
chr1 (473-503)||(42720859-42720889)
chr1 (412-457)||(49943999-49944044)
[»] scaffold0286 (1 HSPs)
scaffold0286 (421-464)||(16839-16882)


Alignment Details
Target: chr6 (Bit Score: 574; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 5 - 606
Target Start/End: Complemental strand, 27096456 - 27095855
Alignment:
Q  5 acacacccaagaggccaagaccataacaattgactaagaaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaattta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096456 acacacccaagaggccaagaccataacaattgactaagaaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaattta 27096357  T
Q  105 atgattgaagttatatcaaaatgacactaaaatattcttttggcttcacataaggtacatgtaaaccacataattggtggaaatgaacaactgtgatgtt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096356 atgattgaagttatatcaaaatgacactaaaatattcttttggcttcacataaggtacatgtaaaccacataattggtggaaatgaacaactgtgatgtt 27096257  T
Q  205 gaaagagcacaagagaccccccaagccatttcagaatcgtacatcaaactttgtaagacgttacacagtcaaagcaaaagtgatttaaattttcttcaac 304  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27096256 gaaagagcacaagagaccccccaagccatttcagaatcgtacttcaaactttgtaagacgttacacagtcaaagcaaaagtgatttgaattttcttcaac 27096157  T
Q  305 actaaatccaccaatgtacaatcgaaaatctgaatttacatcacacgtttaaacaaattatccttgatcaaaatcccattgttcattaagaaaataaagc 404  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27096156 actgaatccaccaatgtacaatcgaaaatctgaatttacatcacacgtttaaacaaattatccttgatcaaaatcctattgttcattaagaaaataaagc 27096057  T
Q  405 atgtcggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaata 504  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27096056 atgtcggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaata 27095957  T
Q  505 gtttaaatcaagaggattgtatctcattttacacttgccttaaaaggtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaaca 604  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27095956 gtttaaatcgagaggattgtatctcattttacacttgccttaaaaggtttgttttttataaggcaaaaagtaggttaggcatcaaggagcgccagaaaca 27095857  T
Q  605 tc 606  Q
    ||    
T  27095856 tc 27095855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 606
Target Start/End: Complemental strand, 15081726 - 15081671
Alignment:
Q  551 gtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatc 606  Q
    |||| ||||||||||||||| ||||||||||||||||||||| | | |||||||||    
T  15081726 gttttttttttataaggcaagaagtaggttagacatcaaggaacactagaaacatc 15081671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 19247402 - 19247354
Alignment:
Q  556 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatc 606  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  19247402 ttttttataaggcaaa--gtaggttaggcatcaaggagcgccagaaacatc 19247354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 2165527 - 2165570
Alignment:
Q  421 ctatcattaaatgaatctcaccatcattaattattttcaaaaaa 464  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||    
T  2165527 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 2165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 2177160 - 2177203
Alignment:
Q  421 ctatcattaaatgaatctcaccatcattaattattttcaaaaaa 464  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||    
T  2177160 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 2177203  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 41072982 - 41073079
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaa 511  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| || |   ||| ||| |||||||||||||||||||||||||||||| || |||||    
T  41072982 tgggtcctatcattaaatggatctcacaatcattaattatttttaagattttttgtgtctttatctctctaaatgaaagaaatggagaagagattaaa 41073079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 373192 - 373296
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaattta-tgtttttatctctctaaatgaaagaaatggagaatagttt 508  Q
    |||| |||||| ||| |||||||||||| |||||| |||||||||||| || |  |||  | | ||||||| |||||||| ||||||||||||| |||||    
T  373192 ggtggtgggtcatattattaaatgaatcccaccattattaattatttttaagattttttgtatctttatctttctaaatggaagaaatggagaagagttt 373291  T
Q  509 aaatc 513  Q
    |||||    
T  373292 aaatc 373296  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 502
Target Start/End: Original strand, 28716572 - 28716656
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaa 502  Q
    ||||| ||||||||||||| |||  || ||||||||||||||| ||||   || ||| ||| ||||| ||||||||||||||||||||    
T  28716572 tgggttctatcattaaatggatcctactatcattaattatttttaaaa---ttgtgtctttctctctttaaatgaaagaaatggagaa 28716656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 454
Target Start/End: Complemental strand, 10877741 - 10877706
Alignment:
Q  419 tcctatcattaaatgaatctcaccatcattaattat 454  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10877741 tcctatcattaaatgaatcccaccatcattaattat 10877706  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 521
Target Start/End: Original strand, 17286648 - 17286723
Alignment:
Q  446 attaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagaggat 521  Q
    ||||||||||| ||||| |||| ||| ||||||| |  ||||| ||||||||||||| |||||||||  |||||||    
T  17286648 attaattatttacaaaatatttgtgtatttatcttttcaaatggaagaaatggagaagagtttaaatggagaggat 17286723  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 502
Target Start/End: Original strand, 374536 - 374569
Alignment:
Q  469 tgtttttatctctctaaatgaaagaaatggagaa 502  Q
    ||||||||||||||||||||||||||| ||||||    
T  374536 tgtttttatctctctaaatgaaagaaagggagaa 374569  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 428 - 512
Target Start/End: Complemental strand, 13035174 - 13035090
Alignment:
Q  428 taaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||| ||||||| |||||||  |||||||||| ||||||||||||    
T  13035174 taaatgaatctcaccatcattaattattttcaagatttttgtgtctttatctttctaaatagaagaaatggaaaatagtttaaat 13035090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 517
Target Start/End: Complemental strand, 15901493 - 15901389
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaa--aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    |||||||||| ||||||||  ||| || ||||||||||||||||||  |||| || |||||||||||||| || |  |||||||| |||| || ||||||    
T  15901493 tgggtcctattattaaatgggtcttactatcattaattattttcaaaaaaaaattgtgtttttatctctcaaagtagaagaaatgaagaagagattaaat 15901394  T
Q  513 caaga 517  Q
     ||||    
T  15901393 gaaga 15901389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 517
Target Start/End: Complemental strand, 29916370 - 29916322
Alignment:
Q  469 tgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaaga 517  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  29916370 tgtttttatctctctgaatgaaagaaatgaagaagagtttaaatgaaga 29916322  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 33709186 - 33709154
Alignment:
Q  469 tgtttttatctctctaaatgaaagaaatggaga 501  Q
    |||||||||||||| ||||||||||||||||||    
T  33709186 tgtttttatctctccaaatgaaagaaatggaga 33709154  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 512
Target Start/End: Complemental strand, 43222168 - 43222070
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatt-tatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||  || | ||| ||||||||||| ||||||| |||||||| | |||||||||    
T  43222168 tgggtcttatcattaaatggatcccaccatcattaattattttcaaaattttatgtgtctttatctctctgaatgaaataaatggagcagagtttaaat 43222070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 500
Target Start/End: Complemental strand, 35650365 - 35650274
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaaa-aaatttatgtttttatctctctaaatgaaagaaatggag 500  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||| |||    ||||||||| |||||||  |||||||||||||||||    
T  35650365 ggtggtgggtcctattattaaatgaatttcaccatcattaattatttttaaatttttttatgtttatatctcttcaaatgaaagaaatggag 35650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 505
Target Start/End: Original strand, 2582385 - 2582481
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatag 505  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||| || |   ||| ||| | |||||| | ||||||||||||||||||||||    
T  2582385 ggtggtgggtcctatcattaaataaatctcatcatcattaattatttttaagattttttgtgtctatatctccccaaatgaaagaaatggagaatag 2582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 9465790 - 9465739
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaaa 461  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||||    
T  9465790 ggtggtggatcctatcattaaatgaatttcaccatcattaattattttcaaa 9465739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 14733597 - 14733510
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaa 502  Q
    |||||| ||| ||||||||| || ||||||| ||||||||||  |||||| || ||| ||||||| |||||||| |||||||||||||    
T  14733597 tgggtcttattattaaatgagtcccaccatcgttaattatttaaaaaaaaattgtgtctttatctttctaaatggaagaaatggagaa 14733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 556 - 594
Target Start/End: Complemental strand, 20495119 - 20495081
Alignment:
Q  556 ttttttataaggcaaaaagtaggttagacatcaaggagc 594  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  20495119 ttttttataaggcaaaaagtagatgagacatcaaggagc 20495081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 512
Target Start/End: Complemental strand, 32577568 - 32577466
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagttta 509  Q
    |||| |||||||||||||||||||| |  |||||||||||||| ||||||| |  ||| ||| |||||||||| ||||  ||||||||||||| ||||||    
T  32577568 ggtggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagatttttgtgtctttatctctccaaatagaagaaatggagaagagttta 32577469  T
Q  510 aat 512  Q
    |||    
T  32577468 aat 32577466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 415 - 522
Target Start/End: Original strand, 33338204 - 33338311
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatca 514  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||| |  ||| ||| |||||||||  ||| | |||||||||| || |||||||||      
T  33338204 tgggtcctatcattaaatgagtctcatcatcattaactattttcaagatttttgtgtctttatctcttcaaacggaagaaatggaaaagagtttaaatgg 33338303  T
Q  515 agaggatt 522  Q
    ||||||||    
T  33338304 agaggatt 33338311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 521
Target Start/End: Complemental strand, 48950657 - 48950545
Alignment:
Q  410 ggtgatgggtcctatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagttt 508  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||| |   ||| | ||||||||| | |||||| | ||||| ||||| |||||    
T  48950657 ggtggtggatcctatcattaaatgagtctcaccatcattaattattttcaagattttttgtatttttatctttgtaaatggatgaaatagagaagagttt 48950558  T
Q  509 aaatcaagaggat 521  Q
    ||||  |||||||    
T  48950557 aaatggagaggat 48950545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 28229438 - 28229477
Alignment:
Q  418 gtcctatcattaaatgaatctcaccatcattaattatttt 457  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  28229438 gtcctatcattaaatgagtctcaccatcattaattttttt 28229477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 38927636 - 38927694
Alignment:
Q  43 aaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaat 101  Q
    ||||||||||||| || |||||||||||  | |||||||| |||||||| |||||||||    
T  38927636 aaatcacacatgaatatgatgcattttaccacgacattgtagtgggtttctccaccaat 38927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 7324421 - 7324371
Alignment:
Q  556 ttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatc 606  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  7324421 ttttttataaggcaaaaagtaggttaggcatcaaggagtgccagaaacatc 7324371  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 512
Target Start/End: Original strand, 18118537 - 18118631
Alignment:
Q  419 tcctatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    |||||||||||||||| || |||||||||||||||||||||| |   ||||| | ||||||| | |||||  ||||||||||||||| |||||||    
T  18118537 tcctatcattaaatgagtcacaccatcattaattattttcaagattttttatatctttatctatttaaatagaagaaatggagaataatttaaat 18118631  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 676059 - 676100
Alignment:
Q  419 tcctatcattaaatgaatctcaccatcattaattattttcaa 460  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  676059 tcctatcattaaatgagtctcaccatcattaattattttcaa 676100  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 562 - 606
Target Start/End: Original strand, 8612632 - 8612676
Alignment:
Q  562 ataaggcaaaaagtaggttagacatcaaggagcgccagaaacatc 606  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  8612632 ataaggcaagaagtaggttaggcatcaaggagcgccagaaacatc 8612676  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 30760293 - 30760384
Alignment:
Q  422 tatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    ||||||| ||||| |  ||||||||||||||||||| || |   ||||||| |||||||||  ||||||||||||||||||| |||||||||    
T  30760293 tatcattgaatgagttgcaccatcattaattatttttaagattttttatgtctttatctctacaaatgaaagaaatggagaagagtttaaat 30760384  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 512
Target Start/End: Complemental strand, 20400094 - 20399996
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaa-aaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    |||||| ||||||||||||| || ||| ||||||||||||||| || |   ||||||| ||||||| | |||||  |||||||||| |||| |||||||    
T  20400094 tgggtcttatcattaaatgagtcacacgatcattaattatttttaagattttttatgtctttatctgtttaaatagaagaaatggaaaataatttaaat 20399996  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 26826072 - 26826114
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattatttt 457  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  26826072 tgggtcctatcattaaatgagtttaaccatcattaattatttt 26826114  T

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Target: scaffold0417 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 606
Target Start/End: Complemental strand, 5657 - 5602
Alignment:
Q  551 gtttgttttttataaggcaaaaagtaggttagacatcaaggagcgccagaaacatc 606  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||    
T  5657 gttttttttttataaggcaagaagtaggttggacatcaaggaacgccggaaacatc 5602  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 521
Target Start/End: Complemental strand, 42720668 - 42720586
Alignment:
Q  439 caccatcattaattattttcaaaaaatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagaggat 521  Q
    |||||| ||||| |||||||||  | ||| ||| |||||||||||||||  ||||||| ||||| ||||||||| ||||||||    
T  42720668 caccattattaactattttcaagtattttttgtctttatctctctaaatagaagaaatagagaaaagtttaaatgaagaggat 42720586  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 460
Target Start/End: Original strand, 24413315 - 24413360
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattattttcaa 460  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  24413315 tgggtcctatcattaaatgggtcccaccatcattaattattttcaa 24413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 521
Target Start/End: Original strand, 36700860 - 36700961
Alignment:
Q  421 ctatcattaaatgaatctcaccatcattaattattttcaaaa-aatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagagg 519  Q
    ||||||||||||  || |||||||||||||||||||||||||   ||| ||| | |||||||| |||| |||||||| ||||| || ||||||  |||||    
T  36700860 ctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagagg 36700959  T
Q  520 at 521  Q
    ||    
T  36700960 at 36700961  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 421 - 521
Target Start/End: Original strand, 36716964 - 36717065
Alignment:
Q  421 ctatcattaaatgaatctcaccatcattaattattttcaaaa-aatttatgtttttatctctctaaatgaaagaaatggagaatagtttaaatcaagagg 519  Q
    ||||||||||||  || |||||||||||||||||||||||||   ||| ||| | |||||||| |||| |||||||| ||||| || ||||||  |||||    
T  36716964 ctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtctgtatctctccaaataaaagaaattgagaagaggttaaatggagagg 36717063  T
Q  520 at 521  Q
    ||    
T  36717064 at 36717065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 512
Target Start/End: Complemental strand, 22536807 - 22536737
Alignment:
Q  443 atcattaattattttcaaaaaatt-tatgtttttatctctctaaatgaaagaaatggagaatagtttaaat 512  Q
    |||||||||||||||||||||| | | | | ||||||||| |||||| ||||||||||||| | |||||||    
T  22536807 atcattaattattttcaaaaaaatatgtctctttatctctttaaatggaagaaatggagaagactttaaat 22536737  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 26768937 - 26768895
Alignment:
Q  415 tgggtcctatcattaaatgaatctcaccatcattaattatttt 457  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||    
T  26768937 tgggttctatcattaagtgagtctcaccatcattaattatttt 26768895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 503
Target Start/End: Original strand, 42720859 - 42720889
Alignment:
Q  473 tttatctctctaaatgaaagaaatggagaat 503  Q
    |||||||||||||||||||||||||||||||    
T  42720859 tttatctctctaaatgaaagaaatggagaat 42720889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 49943999 - 49944044
Alignment:
Q  412 tgatgggtcctatcattaaatgaatctcaccatcattaattatttt 457  Q
    ||||||||||||| ||||||||| ||  ||||||||||||||||||    
T  49943999 tgatgggtcctattattaaatgagtcctaccatcattaattatttt 49944044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 464
Target Start/End: Complemental strand, 16882 - 16839
Alignment:
Q  421 ctatcattaaatgaatctcaccatcattaattattttcaaaaaa 464  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||    
T  16882 ctatcattaaatgagtctcactatcattaattatttttaaaaaa 16839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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