View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5243-Insertion-6 (Length: 530)
Name: NF5243-Insertion-6
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243-Insertion-6 |
 |  |
|
| [»] scaffold0211 (2 HSPs) |
 |  |  |
|
| [»] scaffold0084 (3 HSPs) |
 |  |  |
|
| [»] scaffold0062 (1 HSPs) |
 |  |  |
|
| [»] scaffold0346 (1 HSPs) |
 |  |  |
|
| [»] scaffold0004 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0211 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 523
Target Start/End: Original strand, 24623 - 25135
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggttaactaaaaatgagtgtgacacttgttcaacatgat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24623 |
tctgataccatcttagaatttgtggttgggcttaatacaacgccataaaatcggcttgtgaggttaaactaaaatgagtgtgacgcttgttcaacatgat |
24722 |
T |
 |
| Q |
110 |
caatggtggagccnnnnnnnnnn-ctcgatgggtcactgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaac |
208 |
Q |
| |
|
||||| ||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
24723 |
caatgatggagccaaaaaaaaaatctcggtgggtcgctgtttaccgatatttttgataaacaataagactagttttaaa---tttcttgcaggatcaaac |
24819 |
T |
 |
| Q |
209 |
tagaaatcccaaatggccaaataaacaatggtgaatagcttggcaggaagagaaaacataacaaaa-gttagttagagccacactaccaaatggccaaat |
307 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
24820 |
taaaaatcccaaatggccaaataaacaatggtaaacagcttggcaggaagagaaaacatcacaaaaagttagtcagagccacactaccaaatggccaaat |
24919 |
T |
 |
| Q |
308 |
gattgcatagctgcaaactaaataatcaagtagaagtcmctcaacatctgctttttgtagtttctttttctgtgttaaaacttgatcagaatctgaggta |
407 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24920 |
gattgcatagctgcaaactacataatcaagtagaagtcacccaa-atctgctttttgcaatttctttttctgtgttaaaacttgatcagaatctgaaata |
25018 |
T |
 |
| Q |
408 |
tgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaagaaagtaaacacaaagcaattttatattgg |
506 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |||| ||||||||| |||||||||||||| |
|
|
| T |
25019 |
tgtagattttgactcatggtttgaatgcagcggattaaatacataacacaaagataaagagacagagagacaaagcaaacacaaaacaattttatattgg |
25118 |
T |
 |
| Q |
507 |
ttcctccgacaacaaag |
523 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
25119 |
ttcctcccacaataaag |
25135 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 24461 - 24524
Alignment:
| Q |
226 |
caaataaacaatggtg-aatagcttggcaggaagagaaaacataacaaaagttagttagagcca |
288 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||| |||||| |||| ||||| ||||||||| |
|
|
| T |
24461 |
caaataaacaaaggtgcaacagcttggcaggaagagcaaacatcacaacagttaattagagcca |
24524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 31202 - 30828
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggtt-aactaaaaatgagtgtgacacttgttcaacatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| || ||| |||||||||| |||| |||||||||||||| |
|
|
| T |
31202 |
tctgataccatcttagaatttgtggttgggcttaacataatgccataaaataggctagtgagattgaacgaaaaatgagtttgacgcttgttcaacatga |
31103 |
T |
 |
| Q |
109 |
tcaatggtggagccnnnnnnnnnnc-----tcgatgggtcactgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagat |
203 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||||||| |||| |||| ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
31102 |
tcaatggtggagccaaaaaaaaataaaaaattggtgggtcgctgtttaccgattttttaaataatcaatatgactagttttaaaatattgcttgcatgat |
31003 |
T |
 |
| Q |
204 |
caaactagaaatcccaaatggccaaataaacaatggtgaatagcttggcaggaagagaaaacataacaaaagttagttagagccacactaccaaatggcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
31002 |
caaactagaaatcccaaatggccaaataaacaatggtgaacagcttggcaggaagagaaaacatcacaaaagttagtcagagccacactaccaaatggcc |
30903 |
T |
 |
| Q |
304 |
aaatgattgcatagctgcaaactaaataatcaagtagaagtcmctcaacatctgctttttgtagtttctttttct |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| |
|
|
| T |
30902 |
aaatgattgcatagctgcaaactaaataatcaagtagaagtcacccaacatctgctttttgcagtctctttttct |
30828 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 281 - 523
Target Start/End: Complemental strand, 18431 - 18180
Alignment:
| Q |
281 |
tagagccacactaccaaatggccaaatgattgcatagctgcaaactaaataatcaagtagaagtcmctcaacatctgctttttgtagtttctttttc--t |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||| | |
|
|
| T |
18431 |
tagagccacactaccaaatggccaaatgattgcatagctgcaaactaaataattaagtagaagtcacccaacatctgctttttgcagtttctttttctat |
18332 |
T |
 |
| Q |
379 |
gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataa------agagacag |
471 |
Q |
| |
|
||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
18331 |
gtgttaaaagcttatcagaatttgagatatgtagattttgactcatggtctgaatgcagcggattaaatacaaaacacaaagataaagagacagagacag |
18232 |
T |
 |
| Q |
472 |
agaaagaaagtaaacacaaagcaattttatattggttcctccgacaacaaag |
523 |
Q |
| |
|
|||||||||| | | | ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
18231 |
agaaagaaagcatagataaatcaattttatattggttcctcctacaacaaag |
18180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 406 - 513
Target Start/End: Complemental strand, 30828 - 30720
Alignment:
| Q |
406 |
tatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaagaaagtaaacacaaagcaattttatatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||| |||||| ||||||||| |||||||||||| |
|
|
| T |
30828 |
tatgtagattttgactcatggtctgaatgcagcggattaaatacagaacacaaagataaaaatacaaagagagaaagcaaacacaaatcaattttatatt |
30729 |
T |
 |
| Q |
505 |
ggttcctcc |
513 |
Q |
| |
|
||||||||| |
|
|
| T |
30728 |
ggttcctcc |
30720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 379 - 518
Target Start/End: Complemental strand, 22317550 - 22317408
Alignment:
| Q |
379 |
gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaa |
475 |
Q |
| |
|
||||||| ||||||||||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||| | || |
|
|
| T |
22317550 |
gtgttaagacttgatcagaatatgaggtatacagattttgatatagagtctgaatgcagcggattaagtacagaacacaaagataaagagacgaaacgag |
22317451 |
T |
 |
| Q |
476 |
agaaagtaaacacaaagcaattttatattggttcctccgacaa |
518 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||| |||| |
|
|
| T |
22317450 |
agaaagtagacacaaaacaattttatactggttcctcctacaa |
22317408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 42454556 - 42454625
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat |
215 |
Q |
| |
|
||||||||| ||||| || |||||||||||| |||||||||| | || |||||| ||||||||||||||| |
|
|
| T |
42454556 |
tgtttaccggtgtttgtggtaaacaataagattagttttaaattgttacttgcaggatcaaactagaaat |
42454625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 35788754 - 35788691
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| |||||||| |||| |||||||| |
|
|
| T |
35788754 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccataaaaccggcttgtgaggt |
35788691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 41635729 - 41635658
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||||| | || |||| |||||| |||||||||||| |
|
|
| T |
41635729 |
tgtttaccggtgtttttggaaaaccataagactagttttaaattgttacttgaaagatcgaactagaaatcc |
41635658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 53828512 - 53828575
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||| ||||||||| | |||||| |
|
|
| T |
53828512 |
tctgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcggcttatgaggt |
53828575 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 18553065 - 18553126
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
18553065 |
tgttttttgtaaacaataagactagttttaaaatgttacttgtgggatcaaactagaaatcc |
18553126 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21685083 - 21685030
Alignment:
| Q |
20 |
tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
21685083 |
tcttagaaattgtggttgggcttaacacaaccccacaaaatcggcttgtgaggt |
21685030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 22231297 - 22231360
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
22231297 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
22231360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 22445547 - 22445508
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22445547 |
tctgataccatcttagaatttgtggttgggtctaacacaa |
22445508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 5628156 - 5628088
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat |
215 |
Q |
| |
|
||||||||| |||||||| ||||||| | | ||| |||||||||||| |||||| |||||||||| |||| |
|
|
| T |
5628156 |
tgtttaccggtgtttttggtaaacaagacg-ctaattttaaaatattacttgcaggatcaaactaaaaat |
5628088 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 21823393 - 21823430
Alignment:
| Q |
150 |
taccgatgtttttgataaacaataagactagttttaaa |
187 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
21823393 |
taccggtgtttttggtaaacaataagactagttttaaa |
21823430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 4464390 - 4464330
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtga |
70 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| || ||| ||||||||| ||||| |
|
|
| T |
4464390 |
tctgataccatcttagaattcgtggttgggtctaacaaaaccccacaaaatcggcttgtga |
4464330 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 16434123 - 16434185
Alignment:
| Q |
154 |
gatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
16434123 |
gatgtttttgataaacaataagactagttttaaaatgttgcttgcaggattaaactagaaatc |
16434185 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 22259559 - 22259488
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
22259559 |
tgtttaccgctgttttttgtaaacaataagactagttttaaataattgcttgcaggatgaaactagaaatcc |
22259488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 3634199 - 3634262
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaact |
209 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
3634199 |
tgtttaccggtgtttttggtaaacaataagactagttttaaataattacttgcaggatcaaact |
3634262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 525
Target Start/End: Original strand, 19122392 - 19122553
Alignment:
| Q |
368 |
tttctttttctgtgt-taaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaag |
465 |
Q |
| |
|
||||||||||| ||| | ||| ||| ||| ||| |||||||| ||||| ||||| | || ||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
19122392 |
tttctttttctctgtgttaaatttggtcataatatgaggtattcagattctgacttagagtgtgaatgcagcgaattaaatacagttcacaaagataaag |
19122491 |
T |
 |
| Q |
466 |
ag--acagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaacaaagat |
525 |
Q |
| |
|
|| ||||||| |||||| | |||||||||| ||||||| | |||||||| |||||| |||| |
|
|
| T |
19122492 |
agacacagagagagaaagcagacacaaagcacttttatactagttcctcccacaacatagat |
19122553 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 3680107 - 3680046
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag |
71 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||| ||||||| | |||||| |
|
|
| T |
3680107 |
tctgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcgacttgtgag |
3680046 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 33494636 - 33494571
Alignment:
| Q |
8 |
gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
33494636 |
gttctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
33494571 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 4868802 - 4868865
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
4868802 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
4868865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 6038750 - 6038801
Alignment:
| Q |
166 |
aaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
6038750 |
aaacaatatgactagttttaaataattacttgcaggatcaaactagaaatcc |
6038801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 8001539 - 8001578
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
8001539 |
tctgataccatcttagaaattgtggttgggcctaacacaa |
8001578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 15082131 - 15082196
Alignment:
| Q |
8 |
gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||||| |||||| | ||| |||||| ||||||||| ||| |||| |||| |||||||| |
|
|
| T |
15082131 |
gttctgataccatattagaaatcgtgtttgggcctaacacaatcccacaaaaccggcttgtgaggt |
15082196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 24203800 - 24203759
Alignment:
| Q |
175 |
gactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
24203800 |
gactaattttaaaatattacttgcaaaatcaaactagaaatc |
24203759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 33053638 - 33053709
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| | || |||||| ||||||||||||||||| |
|
|
| T |
33053638 |
tgtttaccggtgtttttggtaaacaataagactagttttaaattgttacttgcaggatcaaactagaaatcc |
33053709 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 520
Target Start/End: Complemental strand, 23433843 - 23433677
Alignment:
| Q |
357 |
gctttttgtagtttctttttc--tgtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaac |
454 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||| ||||||| ||||| | |||||||| ||| ||||| || |||||||||| ||||||| |
|
|
| T |
23433843 |
gctttttgtagcttctttttccgtgtgttaaaacttggtcataatctgaagtatgcaaattttgacacatattctgattgtagcggattaagaacagaac |
23433744 |
T |
 |
| Q |
455 |
a-caagataaagagacagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
| |||||||||| | || | ||||| | | | || ||||||||||| |||||||||| |||||| |
|
|
| T |
23433743 |
ataaagataaagataaaggaagagaaatcatatataatgcaattttatagtggttcctcccacaaca |
23433677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 13109635 - 13109696
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || | | ||||||||| ||||||| |
|
|
| T |
13109635 |
tgtttttggtaaacaataagactagttttaaaatgttactcgtaggatcaaactggaaatcc |
13109696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 11647654 - 11647583
Alignment:
| Q |
145 |
ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||||||||| |||| ||| ||||||| ||||||| | |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
11647654 |
ctgtttaccggtgttcttggtaaacaagaagactaatcttaaaag-ttgcttgcatgatcaaactagaaatcc |
11647583 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 12317141 - 12317090
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatc |
61 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||| |||||| |
|
|
| T |
12317141 |
tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatc |
12317090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 38475838 - 38475803
Alignment:
| Q |
14 |
ataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38475838 |
ataccatcttagaatttgtggttgggcctaacacaa |
38475803 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 38476133 - 38476074
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtg |
69 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| ||| ||| |||| |||| |||| |
|
|
| T |
38476133 |
tctgataccatcttagaaattgtggttgggcctaacataatcccacaaaaccggcttgtg |
38476074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 422442 - 422496
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggc |
64 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
422442 |
tctgataccatcttagaaattgtggttgggccaaacacaaccccacaaaatcggc |
422496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 19143665 - 19143525
Alignment:
| Q |
382 |
ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaaaga |
478 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||| ||||||| |||||||||| ||| || ||||| | ||||| ||||||||||||| ||||| ||| |
|
|
| T |
19143665 |
ttaaaacctggtcagaatcttaggtatgtagattctgactcagggtctgaatgtagcaga-taaatgtaaaacacaaagataaagagacaaagagagaga |
19143567 |
T |
 |
| Q |
479 |
aagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
||| | ||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
19143566 |
aagaagacacagagcaattttatacaggttcctcccacaaca |
19143525 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 20743064 - 20742924
Alignment:
| Q |
382 |
ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagac--agagaaaga |
478 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||| ||||||| |||||||||| ||| || ||||| | ||||| ||||||||||||| ||||| ||| |
|
|
| T |
20743064 |
ttaaaacctggtcagaatcttaggtatgtagattctgactcagggtctgaatgtagcaga-taaatgtaaaacacaaagataaagagacaaagagagaga |
20742966 |
T |
 |
| Q |
479 |
aagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
||| | ||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
20742965 |
aagaagacacagagcaattttatacaggttcctcccacaaca |
20742924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 4587680 - 4587750
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
4587680 |
tgtttaccggtgtttttggtaaacaatatgactagtttttaaacgttgcttgcaagattaaactagaaatc |
4587750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 21821901 - 21821848
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcgg |
63 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||| |||||||| |
|
|
| T |
21821901 |
tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatcgg |
21821848 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 21861389 - 21861326
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||| |||| |||| ||| |||| |
|
|
| T |
21861389 |
tctgataccatcttagaaatggtggttgggcctaacacaatcccacaaaaccggcttgtaaggt |
21861326 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 25620231 - 25620168
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
25620231 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
25620168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 44874567 - 44874621
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggc |
64 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
44874567 |
tctgataccatcttagacattgtggtttggcctaacacaagcccataaaatcggc |
44874621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 240563 - 240522
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaa |
187 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
240563 |
tgtttaccggtatttttggtaaacaataagactagttttaaa |
240522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 520
Target Start/End: Original strand, 8684845 - 8685011
Alignment:
| Q |
357 |
gctttttgtagtttctttttc--tgtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaac |
454 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||| ||| ||||||||||||| | |||||||| ||| |||||| || ||| ||||| ||||||| |
|
|
| T |
8684845 |
gctttttgcagcttctttttccgtgtgttaaaacttggtcataatctgaggtatgcaaattttgacacatagtctgattgtagcaaattaagaacagaac |
8684944 |
T |
 |
| Q |
455 |
a-caagataaagagacagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
| |||||||||| | || |||||||| | | | || ||||||||||| |||||||||| |||||| |
|
|
| T |
8684945 |
ataaagataaagataaaggaaaagaaagcagatataatgcaattttatagtggttcctcccacaaca |
8685011 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 35406173 - 35406103
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||| ||||||||| ||||| | |||||||| |
|
|
| T |
35406173 |
tgtttaccggtttttttggtaaacaataagactagttttaaaacgttgcttgcaggatcagaatagaaatc |
35406103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 21625154 - 21625213
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||| | ||||||||||||||| |
|
|
| T |
21625154 |
tgtttttagtaaacaataagactagttttaaaatgttacttgtatgatcaaactagaaat |
21625213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 31483251 - 31483310
Alignment:
| Q |
158 |
tttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
31483251 |
tttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaactagaaatcc |
31483310 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 13210621 - 13210584
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13210621 |
tctgataccatcttagaatttgtggttgggcctaacac |
13210584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 31475539 - 31475600
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||| ||||||||| ||||||| ||||||||| |
|
|
| T |
31475539 |
tgtttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaagtagaaatcc |
31475600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 520
Target Start/End: Complemental strand, 16153186 - 16153020
Alignment:
| Q |
359 |
tttttgtagtttctttttctgtg--ttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac |
456 |
Q |
| |
|
||||||||| ||||||||||||| | ||| |||| ||| ||| ||||||||||||| | ||| || |||||||||||||||| || |||||||||| |
|
|
| T |
16153186 |
tttttgtagattctttttctgtgagtcaaagcttggtcataatttgaggtatgtagaatccgacacaacatctgaatgcagcggataaagtacagaacac |
16153087 |
T |
 |
| Q |
457 |
a-agataaagagacagagaa--agaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
| | ||||||||| || ||| |||||| | || |||||||||||||| | |||||| | |||||| |
|
|
| T |
16153086 |
acaaataaagagatagggaaagagaaagcagacgtaaagcaattttatactagttccttccacaaca |
16153020 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 25473213 - 25473283
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatcc |
217 |
Q |
| |
|
|||| |||| |||||||| ||||||| | |||||||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
25473213 |
tgttaaccggtgtttttggtaaacaagac-actagttttaaaatgttacttgcatgatcaaactagaaatcc |
25473283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 28407782 - 28407845
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
28407782 |
tctgataccatcttagaaatcgtggttgggcctaacacaactccacaaaaccggcttgtgaggt |
28407845 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 40149225 - 40149264
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
40149225 |
tctgataccatcttagaaattgtggttgggcctaacacaa |
40149264 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 40379433 - 40379496
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
40379433 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
40379496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 20515886 - 20515848
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagtttt |
184 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
20515886 |
tgtttaccggtgtttttggtaaacaataagactagtttt |
20515848 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 93614 - 93655
Alignment:
| Q |
8 |
gttctgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
93614 |
gttctgataccatcttagaaatcgtggttgggcctaacacaa |
93655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 26655442 - 26655386
Alignment:
| Q |
464 |
agagacagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
||||| ||||| ||| || | |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
26655442 |
agagagagagagagagaggagacacaaagcaattttatactggttcctcccacaaca |
26655386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 520
Target Start/End: Original strand, 9823558 - 9823685
Alignment:
| Q |
393 |
tcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacacaa-gataaagagacagagaaagaaagtaaacacaaa |
491 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| ||||||||||| || |||| || |||||| || |||||||||||||||| |||||| | ||| ||| |
|
|
| T |
9823558 |
tcagaatctgaggtatgcatattctgactcagagtctgaatgcaatgg-ttaagtatagaacataaagataaagagacagagagagaaagcagacataaa |
9823656 |
T |
 |
| Q |
492 |
gcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
|||||||||| || ||||||| |||||| |
|
|
| T |
9823657 |
acaattttatactgattcctcccacaaca |
9823685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 18333688 - 18333751
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
18333688 |
tctgataccatcttagaattcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
18333751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 24531694 - 24531631
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| ||||||||| |||||||| |
|
|
| T |
24531694 |
tctgataccatcttagaaatcgtggttgggcataacacaaccccacaaaatcggcttgtgaggt |
24531631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 30985885 - 30985816
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| ||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
30985885 |
tgtttacctgtgtttttgataaataataatactaattttaaaatgttgcttgc-agatcaaactaggaatc |
30985816 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 520
Target Start/End: Complemental strand, 19570483 - 19570337
Alignment:
| Q |
379 |
gtgttaaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggattaaatacagaacac-aagataaagagacagagaaag |
477 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||| ||| || || |||||||| | ||||||||||| ||||| ||| |||||||||||||| || |
|
|
| T |
19570483 |
gtgttaagtcttgatcagaatctaaggtataaagattctgatacagagtatgaatgcaacagattaaatacaaaacactaagttaaagagacagagatag |
19570384 |
T |
 |
| Q |
478 |
aaagtaaac----acaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
| || || | |||||| ||||||||||| |||||||| |||||| |
|
|
| T |
19570383 |
agagaaagcaggaacaaaggaattttatatttgttcctcccacaaca |
19570337 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 9033531 - 9033586
Alignment:
| Q |
156 |
tgtttttgataaacaataag--actagttttaaaatattgcttgcaagatcaaact |
209 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9033531 |
tgtttttggtaaacaataatgtactagttttaaaatgttgcttgcaagatcaaact |
9033586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 8098412 - 8098349
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||||| ||| |||| |||| |||||||| |
|
|
| T |
8098412 |
tctgataccatattagaaatcgtggttgggcttaacacaaccccacaaaaccggcttgtgaggt |
8098349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 41666982 - 41667045
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
41666982 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
41667045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 474
Target Start/End: Original strand, 12046493 - 12046616
Alignment:
| Q |
357 |
gctttttgtagtttctttttctg--tgtt--aaaacttgatcagaatctgaggtatgtagattttgactcatggtctgaatgcagcggatt-aaatacag |
451 |
Q |
| |
|
||||||| |||||| |||||||| |||| ||||| || ||| || |||| ||||| ||||| ||||||| |||||||||||| | ||| ||||||| |
|
|
| T |
12046493 |
gctttttatagtttatttttctgagtgtttaaaaacctggtcataacctgacgtatgcagattctgactcagagtctgaatgcagtgtattaaaatacat |
12046592 |
T |
 |
| Q |
452 |
aacac-aagataaagagacagaga |
474 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
12046593 |
aacacaaagataaagagacagaga |
12046616 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 16809342 - 16809411
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat |
215 |
Q |
| |
|
|||||||| ||| |||| |||| || ||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
16809342 |
tgtttacccgtgtgtttggtaaataagaagactagttttaaaatgttatttgcaggatcaaactagaaat |
16809411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 18333464 - 18333517
Alignment:
| Q |
20 |
tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
18333464 |
tcttagaatttgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
18333517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 17132470 - 17132530
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||| | |||||||||| ||||| |
|
|
| T |
17132470 |
tgtttttggtaaacaataagactagttttaaaatgttgcttgtaggatcaaactataaatc |
17132530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 16239686 - 16239623
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||| |||| |||| |||||||| |
|
|
| T |
16239686 |
tctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaaccggcttgtgaggt |
16239623 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 9273058 - 9272993
Alignment:
| Q |
8 |
gttctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||||| ||| |||| |||| |||||||| |
|
|
| T |
9273058 |
gttctgataccatattagaaatggtggttgggcttaacacaaccccacaaaaccggcttgtgaggt |
9272993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 520
Target Start/End: Complemental strand, 21528777 - 21528725
Alignment:
| Q |
468 |
acagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
21528777 |
acagagagagaaagcagacacaaagcaattttatactggttcctcctacaaca |
21528725 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 1723065 - 1723128
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
1723065 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
1723128 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 22729195 - 22729156
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
22729195 |
tctgataccatcttagaaattgtggttgggcctaacacaa |
22729156 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 54368611 - 54368548
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||| |||||||| |||| |||||||| |
|
|
| T |
54368611 |
tctgataccatcttagaaatcgtggttgggtctaacacaaccccataaaaccggcttgtgaggt |
54368548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 54567987 - 54567924
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
54567987 |
tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
54567924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 13825007 - 13824970
Alignment:
| Q |
12 |
tgataccatcttagaatttgtggttgggcttaacacaa |
49 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13825007 |
tgatatcatcttagaatttgtggttggtcttaacacaa |
13824970 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 16926938 - 16926999
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag |
71 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||| ||| |||| |||| |||||| |
|
|
| T |
16926938 |
tctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaaccggcttgtgag |
16926999 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 15332080 - 15332024
Alignment:
| Q |
464 |
agagacagagaaagaaagtaaacacaaagcaattttatattggttcctccgacaaca |
520 |
Q |
| |
|
||||| ||||| |||||| | ||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
15332080 |
agagagagagagagaaagcagacaaaaagcaattttatactggttcctcccacaaca |
15332024 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 4521939 - 4521868
Alignment:
| Q |
145 |
ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaatc |
216 |
Q |
| |
|
||||||| || || ||||| |||||||||||| |||||||||||| || |||| || ||||||||||||||| |
|
|
| T |
4521939 |
ctgtttatcggtgattttggtaaacaataagattagttttaaaatgttacttggaaaatcaaactagaaatc |
4521868 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 24115553 - 24115483
Alignment:
| Q |
145 |
ctgtttaccgatgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaactagaaat |
215 |
Q |
| |
|
||||||| || |||||||| |||||||||| |||||||||||||| ||||||| | ||| | ||||||||| |
|
|
| T |
24115553 |
ctgtttatcggtgtttttggtaaacaataaaactagttttaaaatgttgcttgtaggataatactagaaat |
24115483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 51589901 - 51589838
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||| |||||| | |||||||||| |||||||| ||| ||||||||| |||||||| |
|
|
| T |
51589901 |
tctgataccatattagaaatcgtggttgggcctaacacaaccccacaaaatcggcttgtgaggt |
51589838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 24634090 - 24634052
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagtttt |
184 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24634090 |
tgtttaccgatgtttttcgtaaacaataagactagtttt |
24634052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 44787681 - 44787643
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagtttt |
184 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
44787681 |
tgtttaccggtgtttttgataaacaacaagactagtttt |
44787643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 4112539 - 4112592
Alignment:
| Q |
20 |
tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
|||||||| | ||||||| || ||||||||| ||||||||||||| |||||||| |
|
|
| T |
4112539 |
tcttagaaatcgtggttgtgcctaacacaatcccataaaatcggcttgtgaggt |
4112592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 11324636 - 11324673
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttt |
183 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
11324636 |
tgtttaccgatgtgtttggtaaacaataagactagttt |
11324673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 11482657 - 11482694
Alignment:
| Q |
146 |
tgtttaccgatgtttttgataaacaataagactagttt |
183 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
11482657 |
tgtttaccgatgtgtttggtaaacaataagactagttt |
11482694 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 31181512 - 31181565
Alignment:
| Q |
20 |
tcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| | || |||||||| |
|
|
| T |
31181512 |
tcttagaatttgtggttgggcctaacacaaccccataaaaccagcttgtgaggt |
31181565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 38668220 - 38668159
Alignment:
| Q |
10 |
tctgataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgag |
71 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||||||| ||| ||||| ||| |||||| |
|
|
| T |
38668220 |
tctgataccatcttagaaattgtgattgggcctaacacaaccccacaaaattggcttgtgag |
38668159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 4112998 - 4113058
Alignment:
| Q |
13 |
gataccatcttagaatttgtggttgggcttaacacaatgccataaaatcggcatgtgaggt |
73 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||| ||| |||| |||| |||||||| |
|
|
| T |
4112998 |
gataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggt |
4113058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 518
Target Start/End: Original strand, 980 - 1072
Alignment:
| Q |
429 |
tgaatgcagcggattaaatacagaacaca-agataaagagacagagaaagaaa--gtaaacacaaagcaattttatattggttcctccgacaa |
518 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| | ||||||||| | ||||||| | | ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
980 |
tgaatgtagcggattagatatagaacacacatataaagagataaagaaagagaaggcaaacacaaaacaattttatattggttcctcctacaa |
1072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0346 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0346
Description:
Target: scaffold0346; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 12459 - 12408
Alignment:
| Q |
156 |
tgtttttgataaacaataagactagttttaaaatattgcttgcaagatcaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |||| | ||||||| |
|
|
| T |
12459 |
tgtttttgataaacaataagactaattttaaattattacttgtaggatcaaa |
12408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 382026 - 382094
Alignment:
| Q |
359 |
tttttgtagtttctttttctg--tgtt--aaaacttgatcagaatctgaggtatgtagattttgactca |
423 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
382026 |
tttttgcagtttctttttctgagtgtttaaaaacttggtcagaatctgaggtatgcagattgtgactca |
382094 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University