View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243-Insertion-7 (Length: 530)

Name: NF5243-Insertion-7
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243-Insertion-7
NF5243-Insertion-7
[»] chr8 (2 HSPs)
chr8 (75-530)||(37302286-37302737)
chr8 (22-65)||(37302217-37302260)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 75 - 530
Target Start/End: Original strand, 37302286 - 37302737
Alignment:
Q  75 tttttctctctcaatgtatacagaaaatgtatgagcgtccaaataacaatttt-tcttaaatttatgacgtttaactacaccaaataataccgatcttcg 173  Q
    |||||||||||||||||||| |     ||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  37302286 tttttctctctcaatgtatata-----tgtataagcgtccaaataacatttttttcttaaatttatgacgtttaactgcaccaaataataccgatcttcg 37302380  T
Q  174 aacagtagtacagttctactcattataaacgagatacaattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttcccatct 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302381 aacagtagtacagttctactcattataaacgagatacaattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttcccatct 37302480  T
Q  274 gtcaagttggcttttaattgatcatatatcctccggcaacctcactaaatgctcactccatctctgtctctaagaggnnnnnnntaacaaaaagaaagat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  37302481 gtcaagttggcttttaattgatcatatatcctccggcaacctcactaaatgctcactccatctctgtctctaagaggaaaaaaataacaaaaagaaagat 37302580  T
Q  374 accccaacccgtcttattaagaaaataattaaccttggacccatcgctccttttttgtcccctttcttagcttcacaccattaccctaagctttcctcat 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37302581 accccaacccgtcttattaagaaaataattaaccttggacccatcgctccttttttgtcccctttcttagcttcacaccattaccctaagctttcctcat 37302680  T
Q  474 catctcatttcactatcataatttgatctatattttctgcgttactttctctccttc 530  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  37302681 catctcatttcactatcataatttcatctatattttctgcgttactttctatccttc 37302737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 37302217 - 37302260
Alignment:
Q  22 tttctctmksgkyyctactctctttcttttattgtcaacakgat 65  Q
    |||||||   |   |||||||||||||||||||||||||| |||    
T  37302217 tttctctctcgtctctactctctttcttttattgtcaacatgat 37302260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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