View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243-Insertion-9 (Length: 526)

Name: NF5243-Insertion-9
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243-Insertion-9
NF5243-Insertion-9
[»] chr1 (1 HSPs)
chr1 (6-526)||(32487787-32488295)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Complemental strand, 32488295 - 32487787
Alignment:
Q  6 caaccctaccaaatgtaagaattatggtcattttatgcctcctattcctcccaaaatgcttgaagaaatggctaaaatgtctatgttaaaccacatcaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32488295 caaccctaccaaatgtaagaattatggtcattttatgcctcctattccccccaaaatgcttgaagaaatggctaaaatgtctatgttaaaccacatcaaa 32488196  T
Q  106 gatcaccctcaaaatcacaacactaatgaagagcacaccaaaactctttatgtcaacgaaaaaggtggatccatcatagacatgtcccagccaagcagct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  32488195 gatcaccctcaaaatcacaacactaatgaagagcacaccaaaac----------aacgaaaaaggtggatccatcatagacatgtcccagccaagcagct 32488106  T
Q  206 ccactccattatggttgaatgtcttgtgagttagatcttactatttgagaaatgttagggttcatgtatcatataatgtgcaatatatatctaggtcagt 305  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  32488105 ccactccattatggttgactgtcttgtgagttagatcttactatttgagaaatgttatggttcatgtatcatataatgtgcaatatatatctaagtcagt 32488006  T
Q  306 tcatgccaactactataaattgtcactatcaagnnnnnnnnngttggtgttaatgtgcctcagtcaatagatccaacattggttactgcattttcctaaa 405  Q
    |||||||||||||||||||||||||||||||||         |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32488005 tcatgccaactactataaattgtcactatcaagtttttttttg--ggtgttaatgtgcctcagtcaatagatccaacattggttactgcattttcctaaa 32487908  T
Q  406 cagttctttaatttcttgttcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatcatgttatgaaaaattg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32487907 cagttctttaatttcttgttcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatcatgttatgaaaaattg 32487808  T
Q  506 cagcctaattaagatcttcca 526  Q
    |||||||||||||||||||||    
T  32487807 cagcctaattaagatcttcca 32487787  T

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