View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243_high_10 (Length: 336)

Name: NF5243_high_10
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243_high_10
NF5243_high_10
[»] chr1 (7 HSPs)
chr1 (91-271)||(48152736-48152917)
chr1 (5-90)||(48588997-48589082)
chr1 (5-90)||(50164341-50164426)
chr1 (5-90)||(50164568-50164653)
chr1 (5-90)||(48153019-48153103)
chr1 (5-90)||(48594084-48594169)
chr1 (5-90)||(48598695-48598780)
[»] scaffold0095 (1 HSPs)
scaffold0095 (5-84)||(42797-42876)
[»] chr8 (3 HSPs)
chr8 (5-84)||(39440464-39440543)
chr8 (5-90)||(14197763-14197848)
chr8 (5-90)||(39439862-39439947)
[»] chr4 (3 HSPs)
chr4 (5-90)||(5259187-5259272)
chr4 (5-72)||(52532227-52532294)
chr4 (6-73)||(52532306-52532373)
[»] chr7 (1 HSPs)
chr7 (6-90)||(35212007-35212091)
[»] chr3 (4 HSPs)
chr3 (9-90)||(14788382-14788463)
chr3 (5-68)||(14788481-14788544)
chr3 (5-54)||(38000187-38000236)
chr3 (5-37)||(42257318-42257350)
[»] chr5 (1 HSPs)
chr5 (5-54)||(42655635-42655684)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 48152917 - 48152736
Alignment:
Q  91 aaattgttaagaaaaataattattaattgtaggggaactagtattcttttgtttattatccggtagagtatgtattattctaccaaactacttaaaaatt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  48152917 aaattgttaagaaaaataattattaattgtaggggaactagtattcttttgtttattatctggtacagtatgtattattctaccaaactacttaaaaatt 48152818  T
Q  191 gattgaatatcaatgatttgagtttaatgagtcgaatcgagttgttcgtaaat-aattattaaacgagtctaactcgagctt 271  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48152817 gattcaatatcaatgatttgagtttaatgagttgaatcgagttgttcgtgaataaattattaaacgagtctaactcgagctt 48152736  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 48589082 - 48588997
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  48589082 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattattcccaaggctaaaatatgtttttggtccct 48588997  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 50164341 - 50164426
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  50164341 ctagattttcttcttttgtcttcaacctcataaccatcaaccaagacggttattattcccaaggctaaaatatgcttttggtccct 50164426  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 50164653 - 50164568
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  50164653 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattattcccaaggctaaaatatgtttttggtccct 50164568  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 48153103 - 48153019
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  48153103 ctagattttcttcttttgtcttcaatctcacaaccatcaatcaagacggtta-tattcccaaggctaaaatatgcttttgctccct 48153019  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 48594169 - 48594084
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||    
T  48594169 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatttttcccaaggctaaaatatgtttttggtccct 48594084  T

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Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 48598780 - 48598695
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||    
T  48598780 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttatttttcccaaggctaaaatatgtttttggtccct 48598695  T

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Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 42876 - 42797
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttg 84  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  42876 ctagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattattctcaatgctaaaatatgcttttg 42797  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 39440543 - 39440464
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttg 84  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  39440543 ctagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattattctcaatgctaaaatatgcttttg 39440464  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 14197763 - 14197848
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14197763 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaatacggttattattcccaaggctaaaatatgtttttggtccct 14197848  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 39439862 - 39439947
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  39439862 ctagattttcttcttttgtctccaacctcacaaccatcaaccaagacggttattattcccaaggctaaaatatgattttggtccct 39439947  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 5259272 - 5259187
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  5259272 ctagattttcttcttttgttttcaacctcacaactatcaaccaagacggttattattcccaaggctaaaatatgtttttggtccct 5259187  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 52532227 - 52532294
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaa 72  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  52532227 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggttattattcccaaggctaa 52532294  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 52532373 - 52532306
Alignment:
Q  6 tagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaa 73  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  52532373 tagattttcttcttttgtcttcaacctcacaaccatcaaccaagatggttattattcccaaggctaaa 52532306  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 35212007 - 35212091
Alignment:
Q  6 tagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||| |||||    
T  35212007 tagattttcttcttttgtcttcaacctcacacccatcaaccaagacggttattactcccaaggctaaaatatgtttttggtccct 35212091  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 14788382 - 14788463
Alignment:
Q  9 attttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaaggctaaaatatgcttttgttccct 90  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||    
T  14788382 attttcttcttttgtcttcaacctcagaaccatcaaccaagacggttattattcccaaagctaaaatatgtttttggtccct 14788463  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 14788544 - 14788481
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggttattattcccaagg 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  14788544 ctagattttcttcttttgtcttcaacctcacaaccatcaatcaagacggttattattcctaagg 14788481  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 38000236 - 38000187
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggt 54  Q
    |||||||||||||||||||||| |||||||||||||| || |||||||||    
T  38000236 ctagattttcttcttttgtcttcaacctcacaaccattaaccaagacggt 38000187  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 42257318 - 42257350
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaa 37  Q
    |||||||||||||||||||||| ||||||||||    
T  42257318 ctagattttcttcttttgtcttcaacctcacaa 42257350  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 42655684 - 42655635
Alignment:
Q  5 ctagattttcttcttttgtctttaacctcacaaccatcaatcaagacggt 54  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  42655684 ctagattttcttcttttgtcttcaacctcacaaccatcaaccaagacggt 42655635  T

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