View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5243_high_15 (Length: 296)

Name: NF5243_high_15
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5243_high_15
NF5243_high_15
[»] chr1 (19 HSPs)
chr1 (5-275)||(4077950-4078220)
chr1 (5-57)||(25479580-25479632)
chr1 (5-57)||(7137017-7137069)
chr1 (5-57)||(7472310-7472362)
chr1 (5-57)||(35590911-35590963)
chr1 (6-57)||(27140478-27140529)
chr1 (5-63)||(7218087-7218145)
chr1 (15-57)||(52190138-52190180)
chr1 (4-57)||(26779944-26779997)
chr1 (8-57)||(34952217-34952266)
chr1 (6-63)||(35179139-35179196)
chr1 (8-57)||(37811854-37811903)
chr1 (5-33)||(8130435-8130463)
chr1 (5-53)||(25005820-25005868)
chr1 (5-53)||(27887141-27887189)
chr1 (5-57)||(34290235-34290287)
chr1 (5-57)||(37842374-37842426)
chr1 (5-33)||(42556674-42556702)
chr1 (9-57)||(45205071-45205119)
[»] chr5 (19 HSPs)
chr5 (5-53)||(2568657-2568705)
chr5 (6-57)||(5284467-5284518)
chr5 (5-52)||(34245723-34245770)
chr5 (7-63)||(4014437-4014493)
chr5 (5-57)||(10272450-10272502)
chr5 (5-57)||(17368675-17368727)
chr5 (5-57)||(32172652-32172704)
chr5 (5-57)||(34975363-34975415)
chr5 (5-57)||(41016178-41016230)
chr5 (62-137)||(11104980-11105055)
chr5 (6-57)||(18543216-18543266)
chr5 (5-51)||(28776992-28777038)
chr5 (5-63)||(37588373-37588431)
chr5 (8-57)||(10125737-10125786)
chr5 (8-57)||(40205093-40205142)
chr5 (4-57)||(43300876-43300929)
chr5 (80-136)||(10771809-10771865)
chr5 (5-57)||(15309012-15309064)
chr5 (7-63)||(17258896-17258952)
[»] chr3 (23 HSPs)
chr3 (6-60)||(51130750-51130804)
chr3 (6-63)||(21367667-21367724)
chr3 (6-62)||(1816583-1816639)
chr3 (5-57)||(24280710-24280762)
chr3 (1-57)||(25075061-25075117)
chr3 (5-57)||(53789480-53789532)
chr3 (6-57)||(34610825-34610876)
chr3 (13-63)||(30573927-30573977)
chr3 (5-39)||(43875647-43875681)
chr3 (5-63)||(44747421-44747479)
chr3 (8-53)||(2825149-2825194)
chr3 (5-62)||(14548735-14548792)
chr3 (6-63)||(20669172-20669229)
chr3 (5-50)||(22203429-22203474)
chr3 (6-63)||(40665429-40665486)
chr3 (64-137)||(44295604-44295677)
chr3 (6-63)||(54775127-54775184)
chr3 (5-53)||(18405854-18405902)
chr3 (5-57)||(20502087-20502139)
chr3 (1-29)||(22214706-22214734)
chr3 (81-137)||(25459550-25459606)
chr3 (5-57)||(43115055-43115107)
chr3 (5-53)||(51510216-51510264)
[»] chr2 (15 HSPs)
chr2 (5-57)||(39983341-39983393)
chr2 (5-63)||(33942149-33942207)
chr2 (6-57)||(43985022-43985073)
chr2 (70-136)||(28803451-28803517)
chr2 (6-58)||(9477952-9478004)
chr2 (5-57)||(11513897-11513949)
chr2 (13-57)||(35379035-35379079)
chr2 (6-49)||(3049974-3050017)
chr2 (11-57)||(24097813-24097859)
chr2 (5-63)||(43635114-43635172)
chr2 (9-46)||(5043590-5043627)
chr2 (80-137)||(6547982-6548039)
chr2 (6-63)||(33941909-33941966)
chr2 (6-51)||(36863650-36863695)
chr2 (5-57)||(9174814-9174866)
[»] chr8 (20 HSPs)
chr8 (5-57)||(27028830-27028882)
chr8 (5-63)||(7714241-7714299)
chr8 (15-63)||(11494155-11494203)
chr8 (74-137)||(6526172-6526235)
chr8 (6-57)||(9956833-9956884)
chr8 (6-57)||(11569476-11569527)
chr8 (5-56)||(27754403-27754454)
chr8 (13-63)||(20672757-20672807)
chr8 (5-63)||(31862492-31862550)
chr8 (5-63)||(39561554-39561612)
chr8 (7-57)||(39881771-39881821)
chr8 (6-63)||(1930035-1930092)
chr8 (65-130)||(2235583-2235648)
chr8 (6-63)||(10075564-10075621)
chr8 (5-38)||(35298515-35298548)
chr8 (9-57)||(4762512-4762560)
chr8 (5-57)||(7918792-7918844)
chr8 (5-57)||(30013217-30013269)
chr8 (5-49)||(43709272-43709316)
chr8 (13-57)||(44236842-44236886)
[»] chr6 (15 HSPs)
chr6 (6-53)||(31812036-31812083)
chr6 (13-63)||(8364989-8365039)
chr6 (7-63)||(31776288-31776344)
chr6 (8-54)||(103433-103479)
chr6 (5-55)||(1401108-1401158)
chr6 (6-63)||(5328973-5329030)
chr6 (5-38)||(5623155-5623188)
chr6 (63-132)||(5977005-5977074)
chr6 (5-57)||(835268-835320)
chr6 (5-57)||(837235-837287)
chr6 (12-56)||(2205610-2205654)
chr6 (5-57)||(4006713-4006765)
chr6 (13-57)||(12230368-12230412)
chr6 (1-57)||(13907580-13907636)
chr6 (13-53)||(28088245-28088285)
[»] chr7 (13 HSPs)
chr7 (8-54)||(48917368-48917414)
chr7 (2-57)||(514763-514818)
chr7 (6-57)||(24363620-24363671)
chr7 (5-63)||(20526445-20526503)
chr7 (6-56)||(39334193-39334243)
chr7 (6-60)||(39360023-39360077)
chr7 (5-63)||(39967919-39967977)
chr7 (5-54)||(46104589-46104638)
chr7 (13-57)||(7244687-7244731)
chr7 (5-84)||(20881630-20881707)
chr7 (13-57)||(21453301-21453345)
chr7 (5-53)||(30812147-30812195)
chr7 (1-29)||(44241854-44241882)
[»] chr4 (13 HSPs)
chr4 (9-63)||(11802537-11802591)
chr4 (5-53)||(17822888-17822936)
chr4 (6-57)||(2996573-2996624)
chr4 (5-52)||(28615333-28615380)
chr4 (6-57)||(47800623-47800674)
chr4 (8-63)||(55084494-55084549)
chr4 (9-63)||(4798579-4798633)
chr4 (90-136)||(32420979-32421025)
chr4 (5-57)||(30024705-30024757)
chr4 (6-50)||(32764934-32764978)
chr4 (5-57)||(49202644-49202696)
chr4 (13-57)||(53673677-53673721)
chr4 (5-57)||(53943605-53943657)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 4078220 - 4077950
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagctgtttttatatgttctgtcaaacaatatcacaagtgcttctg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  4078220 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagctatttttataagttctgtcaaacaatatcacaagtgcttctg 4078121  T
Q  105 ctggtagctaagctcgaataagtcaatccaaaccggcacaaagctttgtattgttactgatttgtttgattcgcactcatatgtacctttctatatttac 204  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4078120 ctggtagctaacctcgaataagtcaatccaaactggcacaaagctttgtattgttactgatttgtttgatttgcactcatatgtacctttctatatttac 4078021  T
Q  205 agggttattccaaaagctctcatgccccatgaggtatttgtgctactactactatttgtgtaactgttata 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4078020 agggttattccaaaagctctcatgccccatgaggtatttgtgctactactactatttgtgtaactgttata 4077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 25479580 - 25479632
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| | | ||||| |||||||||||||||||    
T  25479580 ctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaa 25479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7137069 - 7137017
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| ||| || || |||||||||||||||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaa 7137017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 7472310 - 7472362
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||| ||||||||||| ||| ||||| |||||||||||||||||    
T  7472310 ctataagctgtttccataagctatcttggagagcttatgaaaataagctgaaa 7472362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 35590963 - 35590911
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||| | |||||||||||||||||| ||||| ||| |||||||||||||    
T  35590963 ctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaa 35590911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 27140478 - 27140529
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||| |||||| |||||||||||||| ||||| ||| |||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaa 27140529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 7218145 - 7218087
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||||| ||||| ||| || || ||||||||||| ||||| |||||    
T  7218145 ctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagct 7218087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 52190138 - 52190180
Alignment:
Q  15 ttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||| ||||| | |||||||||||||||    
T  52190138 ttttcataagctatcatggagagcttacgaaaataagctgaaa 52190180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 26779997 - 26779944
Alignment:
Q  4 cctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||||| ||  || || ||||||||||| |||||    
T  26779997 cctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaa 26779944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 34952217 - 34952266
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||  | || || |||||||||||||||||    
T  34952217 taagttgttttcataagctatcaaagagaacttatgaaaataagctgaaa 34952266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 35179139 - 35179196
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| |||||||||||| ||| |||| || || ||||||||||||||||| |||||    
T  35179139 tataagctgttttcataagttattatggagaacttatgaaaataagctgaaaacagct 35179196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 37811854 - 37811903
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||| |||||    
T  37811854 taagctgttttcataagccatcatggagagctaatggaaataagttgaaa 37811903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 8130435 - 8130463
Alignment:
Q  5 ctataagttgttttcataagctatcatgg 33  Q
    |||||||||||||||||||||||||||||    
T  8130435 ctataagttgttttcataagctatcatgg 8130463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 25005868 - 25005820
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||||||||| ||| ||||| || |||| |||||    
T  25005868 ctataagttgttttcataagctatcctggagagcttataaaaacaagct 25005820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 27887189 - 27887141
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||| ||||||||| ||||  || ||||||||||    
T  27887189 ctataagttgttttcataaactatcatggagagcatataaaaataagct 27887141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 34290235 - 34290287
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| ||  || || |||||||||||||||||    
T  34290235 ctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaa 34290287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 37842426 - 37842374
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| ||  || || || ||||||||||||||    
T  37842426 ctataagttgttttcataagctatcttgaagaacttataaaaataagctgaaa 37842374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 42556702 - 42556674
Alignment:
Q  5 ctataagttgttttcataagctatcatgg 33  Q
    |||||||||||||||||||||||||||||    
T  42556702 ctataagttgttttcataagctatcatgg 42556674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 45205071 - 45205119
Alignment:
Q  9 aagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||  ||| | ||| |||||||||||||    
T  45205071 aagttgttttcataagctatcatgtagagttcatggaaataagctgaaa 45205119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 2568657 - 2568705
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2568657 ctataagttgttttcataagctatcatggagagctaatgaaaataagct 2568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 5284518 - 5284467
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  5284518 tataagttgttttcataggctatcatgaagagctaatgaaaataagctgaaa 5284467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 34245723 - 34245770
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagc 52  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  34245723 ctataagttgtttttataagctatcatggagagctgatgaaaataagc 34245770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4014493 - 4014437
Alignment:
Q  7 ataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||| ||||||||||||||||| ||| || || ||||||||||||||||| |||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagct 4014437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 10272502 - 10272450
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||| ||| ||| ||| | |||||||||||||||||    
T  10272502 ctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaa 10272450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 17368675 - 17368727
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| ||| ||| | ||| |||||||||||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaa 17368727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 32172652 - 32172704
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||||||  || |||||| |||||||||||||    
T  32172652 ctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaa 32172704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 34975363 - 34975415
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||| |||||||| ||||||||| ||| ||||||||| |||||||||||||    
T  34975363 ctataaattgttttcgtaagctatcctggagagctaatggaaataagctgaaa 34975415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 41016178 - 41016230
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||| |||| |||||||  |||| |||||||||||||||||    
T  41016178 ctataagttgttttcacaagccatcatggaaagcttatgaaaataagctgaaa 41016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 11104980 - 11105055
Alignment:
Q  62 ctgtttttatatgttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaac 137  Q
    ||||||| ||| |||||  |||| | |||||||||||||| ||||||| | ||||||| ||||| |||||||||||    
T  11104980 ctgttttcataagttctcccaaatagtatcacaagtgcttatgctggttgataagctcaaataaatcaatccaaac 11105055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 18543266 - 18543216
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatg-aaataagctgaaa 18543216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28776992 - 28777038
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataag 51  Q
    ||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  28776992 ctataagctgttttcataagctatcttggagaactaatgaaaataag 28777038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 37588431 - 37588373
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||||||||| |||  ||| ||||| ||| ||||||||||||| |||||    
T  37588431 ctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagct 37588373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 10125786 - 10125737
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||| |||||||||| || ||||| ||||| |||||||||||||||||    
T  10125786 taagttattttcataagttaccatggagagcttatgaaaataagctgaaa 10125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 40205142 - 40205093
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||| ||| ||||| ||  |||||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagctgaaa 40205093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 43300876 - 43300929
Alignment:
Q  4 cctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||  ||||||||| ||| || || |||||||||||||||||    
T  43300876 cctataagttgtttttgtaagctatcttggagaacttatgaaaataagctgaaa 43300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 10771865 - 10771809
Alignment:
Q  80 tcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaa 136  Q
    ||||||||| |||||||||||| |||  |||| ||||||| |||||| |||||||||    
T  10771865 tcaaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15309064 - 15309012
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| ||||||||| | || || ||||||||||| |||||    
T  15309064 ctataagttgttttcattagctatcattgagatcttatgaaaataagatgaaa 15309012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 17258952 - 17258896
Alignment:
Q  7 ataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||| ||||||||||| ||||| ||  ||||| ||||||||||||||||| |||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagct 17258896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 51130750 - 51130804
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagca 60  Q
    |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  51130750 tataaggtgttttcataagctatcatggagagctattgaaaataagctgaaagca 51130804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 21367667 - 21367724
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagct 21367724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 1816583 - 1816639
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagc 62  Q
    |||||||||||||||||||||||  ||| ||||| || |||||||||||||| ||||    
T  1816583 tataagttgttttcataagctatactggagagcttatcaaaataagctgaaaacagc 1816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 24280710 - 24280762
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| |||| |||||||||||||||| ||||| ||||||||||| |||||    
T  24280710 ctataagctgttgtcataagctatcatggagagcttatgaaaataagttgaaa 24280762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25075061 - 25075117
Alignment:
Q  1 taacctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||| |||||| | ||||||||||||||||| | || ||||||||||||||||||||    
T  25075061 taacttataagctcttttcataagctatcatagagaactaatgaaaataagctgaaa 25075117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 53789532 - 53789480
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||| |||||||||||||||| || || |||||| ||||||||||    
T  53789532 ctataagttgttatcataagctatcatggagaacttatgaaattaagctgaaa 53789480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 34610876 - 34610825
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||| |||||||||||||| |||||| || |||||||| ||||||||    
T  34610876 tataagttgctttcataagctatcttggcgaacttatgaaaatcagctgaaa 34610825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 30573977 - 30573927
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||    
T  30573977 tgttttcataagctatcttggagagctgatgaacataagctgaaaacagct 30573927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 43875647 - 43875681
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagct 39  Q
    ||||||||||||||||||||||||||||| |||||    
T  43875647 ctataagttgttttcataagctatcatggagagct 43875681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 44747479 - 44747421
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||| ||||||||||||||||| |||  | || |||||||||||||||||| ||||    
T  44747479 ctataagctgttttcataagctatcttggaaaacttatgaaaataagctgaaagaagct 44747421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 2825149 - 2825194
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    |||||| ||||||||||||||| ||| ||||| |||||||||||||    
T  2825149 taagttattttcataagctatcttggagagcttatgaaaataagct 2825194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 14548792 - 14548735
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagc 62  Q
    |||||||||||||||||||| |||  ||| ||||| ||| ||||||||||||| ||||    
T  14548792 ctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 20669172 - 20669229
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| ||||||||||||||||| ||| ||||| ||| |||||||| |||| |||||    
T  20669172 tataagctgttttcataagctatcttggagagcttatgtaaataagcggaaaacagct 20669229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 22203429 - 22203474
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataa 50  Q
    ||||||||||||||||||||||||| ||| || || ||||||||||    
T  22203429 ctataagttgttttcataagctatcttggagaacttatgaaaataa 22203474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 40665429 - 40665486
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| |||||||||||| |||| ||| ||||| || |||||||||||||| |||||    
T  40665429 tataagatgttttcataagttatcttggagagcttataaaaataagctgaaaacagct 40665486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 44295604 - 44295677
Alignment:
Q  64 gtttttatatgttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaac 137  Q
    ||||| ||| ||||| ||||| | |||||||||||||| |||| |||| ||||||| || ||||||||| ||||    
T  44295604 gttttcataagttctctcaaatagtatcacaagtgcttatgcttgtagataagctcaaacaagtcaatctaaac 44295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 54775127 - 54775184
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| ||||||| |||| |||||||| ||| | ||||||||||| |||||||||||    
T  54775127 tataagctgttttcgtaagttatcatggagagtttatgaaaataagatgaaagcagct 54775184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 18405902 - 18405854
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||||||||| ||| || || |||||| ||||||    
T  18405902 ctataagttgttttcataagctatcttggagaacttatgaaattaagct 18405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 20502139 - 20502087
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| ||  ||||| |||| ||||||||||||    
T  20502139 ctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaa 20502087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22214734 - 22214706
Alignment:
Q  1 taacctataagttgttttcataagctatc 29  Q
    |||||||||||||||||||||||||||||    
T  22214734 taacctataagttgttttcataagctatc 22214706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 25459606 - 25459550
Alignment:
Q  81 caaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaac 137  Q
    |||||||| |||||||||||| |||| || | ||||||| ||||| |||||||||||    
T  25459606 caaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaac 25459550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 43115055 - 43115107
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| | ||||||| | ||||| ||| |||||||||||||    
T  43115055 ctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaa 43115107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 51510264 - 51510216
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    |||||||||||||||||||| |||| ||| ||||| ||| |||||||||    
T  51510264 ctataagttgttttcataagttatcgtggagagcttatggaaataagct 51510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 39983341 - 39983393
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  39983341 ctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaa 39983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 33942149 - 33942207
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||||||| ||||| | |||||||||||||| |||||||| |||||    
T  33942149 ctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagct 33942207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 43985073 - 43985022
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||| ||  ||||| |||||||||||||||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaa 43985022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 28803517 - 28803451
Alignment:
Q  70 atatgttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaa 136  Q
    ||||||||| ||||||| | ||||| |||||| ||| ||||| ||||||| ||||||||||||||||    
T  28803517 atatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 9477952 - 9478004
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaag 58  Q
    |||||||||||||||||||||||| ||| ||| | ||||||||||| ||||||    
T  9477952 tataagttgttttcataagctatcctggagaggttatgaaaataagttgaaag 9478004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11513897 - 11513949
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||||||| || ||  || |||||||||||||    
T  11513897 ctataagttgttttcataagctatcatggagaacttttggaaataagctgaaa 11513949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35379079 - 35379035
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaa 35379035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 3049974 - 3050017
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaata 49  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  3049974 tataagctgttttcataagctatcatggagagcttatgaaaata 3050017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24097813 - 24097859
Alignment:
Q  11 gttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||| |||| ||| ||||| |||||||||||||||||    
T  24097813 gttgttttcataagttatcctggagagcttatgaaaataagctgaaa 24097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 43635172 - 43635114
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||| |||||||||||||||   |||| ||||||||||||| ||| |||||    
T  43635172 ctataagttgttctcataagctatcatgaaaagcttatgaaaataagcttaaaacagct 43635114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 5043627 - 5043590
Alignment:
Q  9 aagttgttttcataagctatcatggcgagctaatgaaa 46  Q
    |||||||||||||||||||||||||  |||||||||||    
T  5043627 aagttgttttcataagctatcatggatagctaatgaaa 5043590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 6547982 - 6548039
Alignment:
Q  80 tcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaac 137  Q
    ||||||| | |||||||| ||| |||| |||| |||||| ||||||||||||||||||    
T  6547982 tcaaacagtctcacaagttcttatgctagtagataagcttgaataagtcaatccaaac 6548039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 33941909 - 33941966
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||| |||||||||||||||||| ||| ||| | |||| |||||| |||||||||||    
T  33941909 tataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagct 33941966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 36863695 - 36863650
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataag 51  Q
    ||||| |||||||||||||||||| ||| ||||| |||||||||||    
T  36863695 tataaattgttttcataagctatcttggagagcttatgaaaataag 36863650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 9174814 - 9174866
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| |   ||||| |||||||||||||||||    
T  9174814 ctataagctgttttcataagctatcttacagagcttatgaaaataagctgaaa 9174866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 27028830 - 27028882
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  27028830 ctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaa 27028882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 7714241 - 7714299
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||| ||||||| ||| ||||| ||||||||||| ||||| |||||    
T  7714241 ctataagttgttttcatgagctatcttggagagctcatgaaaataagttgaaaacagct 7714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 11494155 - 11494203
Alignment:
Q  15 ttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||| ||  ||||| |||||||||||||||||||||||    
T  11494155 ttttcataagctatcttgaagagcttatgaaaataagctgaaagcagct 11494203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 6526235 - 6526172
Alignment:
Q  74 gttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaac 137  Q
    ||||| ||||||||| ||||||| |||| |||  |||| || ||||||||||||||||||||||    
T  6526235 gttctctcaaacaatctcacaagggcttatgccagtagataggctcgaataagtcaatccaaac 6526172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 9956884 - 9956833
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||| ||||| ||| || || |||||||||||||||||    
T  9956884 tataagttgttttcataatctatcttggagaacttatgaaaataagctgaaa 9956833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 11569527 - 11569476
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||| ||||||||||||||||||||| ||| |  ||||||||||||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaa 11569476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27754403 - 27754454
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaa 56  Q
    |||||||| |||||||||||||||  ||| ||||| ||||||||||||||||    
T  27754403 ctataagtggttttcataagctattttggagagcttatgaaaataagctgaa 27754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 20672757 - 20672807
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| |||||||||| ||| ||||| ||||||||||||||||| |||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagct 20672807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 31862492 - 31862550
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||| |||||||||||| |||| | | ||||| ||||||||||||||||| |||||    
T  31862492 ctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagct 31862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 39561612 - 39561554
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||| ||||||||||||   |||| ||| ||||||||||||| |||||    
T  39561612 ctataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaacagct 39561554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 39881821 - 39881771
Alignment:
Q  7 ataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||| ||||||| |||||||||||||| ||||| ||| |||||||||||||    
T  39881821 ataaattgtttttataagctatcatggagagcttatggaaataagctgaaa 39881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 1930035 - 1930092
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| ||||||||||||||||| ||| || ||  |||||||||||||||| |||||    
T  1930035 tataagctgttttcataagctatcttggtgaccttgtgaaaataagctgaaaacagct 1930092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 2235648 - 2235583
Alignment:
Q  65 tttttatatgttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaa 130  Q
    |||| ||||||| ||  ||||| | |||||| ||||| ||||||||| ||||||||||||||||||    
T  2235648 ttttcatatgttttgctaaacactgtcacaaatgcttatgctggtaggtaagctcgaataagtcaa 2235583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 10075621 - 10075564
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| | ||||||||||||||| | | ||||| ||||||||||||| |||||||||    
T  10075621 tataagctattttcataagctatcctagagagcttatgaaaataagctaaaagcagct 10075564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 35298548 - 35298515
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagc 38  Q
    ||||||||||||||||||||||||||||| ||||    
T  35298548 ctataagttgttttcataagctatcatggtgagc 35298515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 4762512 - 4762560
Alignment:
Q  9 aagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||| ||  ||||| ||| |||||||||||||    
T  4762512 aagttgttttcataagctatcttgaagagcttatgtaaataagctgaaa 4762560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7918844 - 7918792
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| ||  |||||  || |||||||||||||    
T  7918844 ctataagttgttttcataagctatcttgtagagcttgtggaaataagctgaaa 7918792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 30013217 - 30013269
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||| ||||||||||||||||| ||  || |||||| |||||||||||||    
T  30013217 ctataagctgttttcataagctatcctgtagaactaatggaaataagctgaaa 30013269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 43709272 - 43709316
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaata 49  Q
    ||||||||||||||||| ||||||| ||| ||||| |||||||||    
T  43709272 ctataagttgttttcatgagctatcctggagagcttatgaaaata 43709316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 44236886 - 44236842
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||  ||| ||||| |||||||||||||||||    
T  44236886 tgttttcataagctatattggagagcttatgaaaataagctgaaa 44236842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 31812083 - 31812036
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  31812083 tataagttgttttcataagctatcttggagagcttatgaaaataagct 31812036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 8365039 - 8364989
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||||||| || || ||||||||||||||||| |||||    
T  8365039 tgttttcataagctatcatggtgaactgatgaaaataagctgaaaacagct 8364989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 31776344 - 31776288
Alignment:
Q  7 ataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||||||||||| |||| ||||||||| ||||| || |||| |||||    
T  31776344 ataagttgttttcataagctataatggagagctaatggaaatacgccgaaaacagct 31776288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 103433 - 103479
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctg 54  Q
    |||||||||||||||||||||| ||| || |||||||||| ||||||    
T  103433 taagttgttttcataagctatcctggagatctaatgaaaacaagctg 103479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 1401108 - 1401158
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctga 55  Q
    ||||||| ||||||||||||||||||||| ||||| ||| | |||||||||    
T  1401108 ctataagctgttttcataagctatcatggagagcttatggagataagctga 1401158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 5328973 - 5329030
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||| ||||||| |||| |||||||| ||| | ||||||||||| |||||||||||    
T  5328973 tataagctgttttcgtaagttatcatggagagtttatgaaaataagatgaaagcagct 5329030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 5623155 - 5623188
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagc 38  Q
    ||||||||||||||||||||||||||||| ||||    
T  5623155 ctataagttgttttcataagctatcatggtgagc 5623188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 5977005 - 5977074
Alignment:
Q  63 tgtttttatatgttctgtcaaacaatatcacaagtgcttctgctggtagctaagctcgaataagtcaatc 132  Q
    |||||| ||| || || ||| |||| ||||||| ||||| |||| |||| ||||||||||||||||||||    
T  5977005 tgttttcataagtgctctcagacaaaatcacaaatgcttatgctagtagataagctcgaataagtcaatc 5977074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 835320 - 835268
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||  |||||||||||||||| ||| || || |||||||||||||||||    
T  835320 ctataagcagttttcataagctatcttggagaacttatgaaaataagctgaaa 835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 837287 - 837235
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||| |||||||| ||||||| ||| || || |||||||||||||||||    
T  837287 ctataagtagttttcattagctatcttggagaacttatgaaaataagctgaaa 837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2205654 - 2205610
Alignment:
Q  12 ttgttttcataagctatcatggcgagctaatgaaaataagctgaa 56  Q
    |||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  2205654 ttgttttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 4006713 - 4006765
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||||   | ||| | |||||||||||||||||    
T  4006713 ctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaa 4006765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 12230368 - 12230412
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||| ||| |||||||||||| ||||| |||||||||||||||||    
T  12230368 tgttatcaaaagctatcatggagagcttatgaaaataagctgaaa 12230412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13907580 - 13907636
Alignment:
Q  1 taacctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||||||||||| ||| ||| ||  | |||||||||| ||||||    
T  13907580 taacctataagttgttttcataagccatcttggagaaattatgaaaataaactgaaa 13907636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 28088285 - 28088245
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||||| ||||| ||| |||||||||    
T  28088285 tgttttcataagctatcatggagagctcatggaaataagct 28088245  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 48917414 - 48917368
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctg 54  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  48917414 taagttgttttcataagctatcttggagagcttatgaaaataagctg 48917368  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 514763 - 514818
Alignment:
Q  2 aacctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||| ||||||||||||||||| ||| |||||  | ||||||||||||||    
T  514763 aacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaa 514818  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 24363671 - 24363620
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||| ||| ||| | ||| |||||||||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagctgaaa 24363620  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 20526445 - 20526503
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||| ||||||||||||||||  ||| || |||||||||||||||| ||| |||||    
T  20526445 ctataagctgttttcataagctattttggagaactaatgaaaataagctaaaaacagct 20526503  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 39334193 - 39334243
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaa 56  Q
    |||||| |||||||| |||||||| ||||||||| ||| ||||||||||||    
T  39334193 tataagctgttttcaaaagctatcctggcgagcttatggaaataagctgaa 39334243  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 39360023 - 39360077
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagca 60  Q
    |||||| |||||||| |||||||| ||||||||| ||  ||||||||||||||||    
T  39360023 tataagatgttttcaaaagctatcctggcgagcttattgaaataagctgaaagca 39360077  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 39967919 - 39967977
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||||||||||||||   | || |||||||||||||| ||||| |||||    
T  39967919 ctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagct 39967977  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 46104638 - 46104589
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctg 54  Q
    ||||||||||||||||||||||||  ||  ||||| ||||||||||||||    
T  46104638 ctataagttgttttcataagctatgctgaagagcttatgaaaataagctg 46104589  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7244687 - 7244731
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||  ||| ||||| |||||||||||||||||    
T  7244687 tgttttcataagctatattggagagcttatgaaaataagctgaaa 7244731  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 20881707 - 20881630
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagctgtttttatatgttctgtcaaa 84  Q
    ||||||||||||||||||| ||||| |   || || |||||||||||||||||  ||||||||| ||| ||||| |||||    
T  20881707 ctataagttgttttcataaactatcttaaagaacttatgaaaataagctgaaa--agctgttttcataagttctctcaaa 20881630  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21453301 - 21453345
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| | | ||||||||||| |||||||||||    
T  21453301 tgttttcataagctatcctagagagctaatgaagataagctgaaa 21453345  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 30812147 - 30812195
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||| ||||||||| ||||||||||| ||||| ||| |||||||||    
T  30812147 ctataagctgttttcattagctatcatggagagcttatggaaataagct 30812195  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44241854 - 44241882
Alignment:
Q  1 taacctataagttgttttcataagctatc 29  Q
    |||||||||||||||||||||||||||||    
T  44241854 taacctataagttgttttcataagctatc 44241882  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 11802537 - 11802591
Alignment:
Q  9 aagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||||||||| |||| ||||| |||| |||||||||||| |||||    
T  11802537 aagttgttttcataagctattatggagagcttatgagaataagctgaaaacagct 11802591  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 17822936 - 17822888
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagct 53  Q
    ||||||||||||||||||||||||| ||| || || |||||||||||||    
T  17822936 ctataagttgttttcataagctatcttggagaacttatgaaaataagct 17822888  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 2996573 - 2996624
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||| |||||    
T  2996573 tataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaa 2996624  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 28615333 - 28615380
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagc 52  Q
    |||||||||||||||||||||||| |||  ||||| ||||||||||||    
T  28615333 ctataagttgttttcataagctataatgaagagcttatgaaaataagc 28615380  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 47800623 - 47800674
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||| ||||||||||||||||| ||  ||||| |||||||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaa 47800674  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 55084549 - 55084494
Alignment:
Q  8 taagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    |||||||||||||| ||||||| | | ||||| ||||||||||||||||| |||||    
T  55084549 taagttgttttcatgagctatcttagagagcttatgaaaataagctgaaaccagct 55084494  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 4798633 - 4798579
Alignment:
Q  9 aagttgttttcataagctatcatggcgagctaatgaaaataagctgaaagcagct 63  Q
    ||||||||||||||||||||| ||| ||||| ||| ||||||||| ||| |||||    
T  4798633 aagttgttttcataagctatcttggagagcttatgcaaataagctcaaaacagct 4798579  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 32421025 - 32420979
Alignment:
Q  90 tcacaagtgcttctgctggtagctaagctcgaataagtcaatccaaa 136  Q
    |||||||||||| |||| |||| ||||||| ||||||||||||||||    
T  32421025 tcacaagtgcttatgctagtaggtaagctcaaataagtcaatccaaa 32420979  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 30024705 - 30024757
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    |||||||||||| ||||||||||||  |||  ||| |||||||||||||||||    
T  30024705 ctataagttgttgtcataagctatctaggcaggcttatgaaaataagctgaaa 30024757  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 32764934 - 32764978
Alignment:
Q  6 tataagttgttttcataagctatcatggcgagctaatgaaaataa 50  Q
    ||||||||| |||  ||||||||||||| ||||||||||||||||    
T  32764934 tataagttgattttgtaagctatcatggagagctaatgaaaataa 32764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 49202644 - 49202696
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||| ||||||||| |||  | |||||||||||||| |||||    
T  49202644 ctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaa 49202696  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 53673721 - 53673677
Alignment:
Q  13 tgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaa 53673677  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 53943605 - 53943657
Alignment:
Q  5 ctataagttgttttcataagctatcatggcgagctaatgaaaataagctgaaa 57  Q
    ||||||||||||| |||||| | |||||| ||||| ||| |||||||||||||    
T  53943605 ctataagttgtttacataagttgtcatggagagcttatggaaataagctgaaa 53943657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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