View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5243_high_26 (Length: 239)
Name: NF5243_high_26
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 18037188 - 18037392
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18037188 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacagt |
18037287 |
T |
|
| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18037288 |
gagttgtttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
18037387 |
T |
|
| Q |
219 |
ttcat |
223 |
Q |
| |
|
||||| |
|
|
| T |
18037388 |
ttcat |
18037392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 53465939 - 53465735
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
53465939 |
acacctatgttcaataattatcccttcttctctgcaagtattttctttccaaaacatcaatattctgcatcttatgaagatggttggacttctatacagt |
53465840 |
T |
|
| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53465839 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
53465740 |
T |
|
| Q |
219 |
ttcat |
223 |
Q |
| |
|
||||| |
|
|
| T |
53465739 |
ttcat |
53465735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 31326906 - 31326706
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
31326906 |
acacctatgttgaataattatcccttcttct----aagtattttctttccaaaacatcaatattctgcatcttatgaagatggttggacttctatacagt |
31326811 |
T |
|
| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31326810 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
31326711 |
T |
|
| Q |
219 |
ttcat |
223 |
Q |
| |
|
||||| |
|
|
| T |
31326710 |
ttcat |
31326706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University