View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_high_7 (Length: 385)
Name: NF5243_high_7
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 49956815 - 49957174
Alignment:
| Q |
18 |
attgctactataatggctaatctgtgcaggttacttatccagctccatcccaacaagccgccccttcttggtcacttgaagagcttccaagaaccgtggt |
117 |
Q |
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| T |
49956815 |
attgctactataatggctaatctgtgcaggttacttatccagcttcatcccaacaagccgccccttcttggtcacctgaagagcttccaagaaccgtggt |
49956914 |
T |
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| Q |
118 |
ttgtacattatatcaaggatcaacattgacaagcatggattttcacccttcccttcattctttacttgctggtaggttgaaatagactggtatattcttg |
217 |
Q |
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| T |
49956915 |
ttgtacattatatcaaggatcaacattgacaagcatggattttcacccttcccttcattctttacttgctggtaggttgaaatagactggtatattcttg |
49957014 |
T |
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| Q |
218 |
tactattaagaagtttagtcgttatatattgattttggaatatcatttctgaaacagttggttgcggaaatggcgacgtgtcgctctgggaggcagggct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49957015 |
tactattaagaagtttagtcgttatatattgattttggaatatcatttctgaaacagttggttgcggaaatggcgacatgtcgctctgggaggcagggct |
49957114 |
T |
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| Q |
318 |
gagagagaggctgatatcaaaacctttcaaaataaaggatattgctgcttgttctgtgtt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49957115 |
gagagagaggctgatatcaaaacctttcaaaataaaggatattgctgcttgttctgtgtt |
49957174 |
T |
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