View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_1 (Length: 771)
Name: NF5243_low_1
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 355 - 762
Target Start/End: Complemental strand, 5195675 - 5195268
Alignment:
| Q |
355 |
gaggcaccggcatataggacgatatataacttttgctttgttaaatagatgtcaccagaaggtaaattctaccacaacattgcattagttgttgactgat |
454 |
Q |
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| T |
5195675 |
gaggcactggcatataggacgatatacaacttttgctttgttaaatagatgtcactagaagggaaattctaccacaacattgcattagttgttgactgat |
5195576 |
T |
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| Q |
455 |
atatagaattggaaaaagctcttgcttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagtgcttgaagatatgaagaattttctgta |
554 |
Q |
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| T |
5195575 |
atatagaattggaaaaagctcttacttaaatgatagatatagtgttgtgtttgtagaaattgataggttaagtgcttgaagatatgaagaattttctgta |
5195476 |
T |
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| Q |
555 |
caattgactttgggataaatttacattatgctgcagctttcaaatttgtaatagtttcaatagaaagttatatacctgatgttatatctgataatttctt |
654 |
Q |
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| T |
5195475 |
caattgactttgggataaatttacattatgctgcagctttcaaatttgtaatagtttcaatagaaagttatatacctgatgttatatctgataatttctt |
5195376 |
T |
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| Q |
655 |
ctttcatgttttgtcttggattaatgattctattttggtctggttgagtataatttgttaacataccaattgggattcaagcaagtgtcattatttttgt |
754 |
Q |
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| T |
5195375 |
ctttcatgttttgtcttggattaatgattctattttggtctggttgagtataatttgttaacataccaattgggattcaagcaagtgtcattatttttgt |
5195276 |
T |
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| Q |
755 |
atattctt |
762 |
Q |
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| T |
5195275 |
atattctt |
5195268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 5195983 - 5195706
Alignment:
| Q |
18 |
attcttcaacatctagctgcaaatatatccacttaggtctgatggtagtttggagtttatgtatttctatagcaagatctgcagaactcatttttgttca |
117 |
Q |
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| T |
5195983 |
attcttcaacatctagctgcaaatatatccacttaggtctgatggtagtttggagtttatgtatttctatatcaagatctgcagaactcatttttgttca |
5195884 |
T |
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| Q |
118 |
actactaattcgtgactaatttctggacactggagtaacaaatttttgtattttaccagttttgatttgattaacttattgcttcatctagtgaattttc |
217 |
Q |
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| T |
5195883 |
actactaattcgtgactaatttctggatactggagtaacgaatttttgtattttaccagttttgatttgattaacttattgcttcatctagtgaattttt |
5195784 |
T |
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| Q |
218 |
cctccacgaatttaatttatggatatagcagtgactaattttatcttttgtttgttatcttcgttgtcttaaatatgt |
295 |
Q |
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| T |
5195783 |
cctccacgaatttaatttatggatatagcagtgactaattttatcttttgtttgttatcttcgttgtcttaaatatgt |
5195706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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