View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_11 (Length: 333)
Name: NF5243_low_11
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 63 - 315
Target Start/End: Complemental strand, 7953023 - 7952771
Alignment:
| Q |
63 |
tcccattttctcatcaccattcactttctctcttcatttttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatg |
162 |
Q |
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| T |
7953023 |
tcccattttctcatcacaattcactttctctcttcatttttcattgagacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaag |
7952924 |
T |
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| Q |
163 |
tttaagtcagctatcaaaagatggccttcattaaccaaactcagccgcaacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaac |
262 |
Q |
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| T |
7952923 |
cttaagtcagctatcaaaagatggccttcattaaccaaactcagccgcaacaatagctctgtctcatcctcaaccaagcaacatgaacatgaacaagaac |
7952824 |
T |
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| Q |
263 |
ttcatgctgtctatgtcggaaagtcgcggcgacaatacctcgtgaactccgat |
315 |
Q |
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| T |
7952823 |
ttcatgctgtctatgtcggaaagtcgcggcgacaatacctcgtgaactccgat |
7952771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 7937123 - 7936840
Alignment:
| Q |
10 |
acatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcactttctctcttcatttttcattga |
109 |
Q |
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| T |
7937123 |
acatcatcatcatttactactactcccactcctttataatcaaaccttaaccctcccattttctcatcaccattcacttt-------------tcattga |
7937037 |
T |
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| Q |
110 |
gacattcatcaaacactttcaccaaaatggccaaacttggaaaactaacaatgtttaagtcagctatcaaaagatggccttcattaaccaaactcagccg |
209 |
Q |
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| T |
7937036 |
gacattcatcaaacactttcaccaaaatggccaaacttggaaaattaacaaagcttaagtcagctatcaaaagatggccttcattaaccaaactcagccg |
7936937 |
T |
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| Q |
210 |
caacaatagctctgtctcagcctcaaccaagcaacatgaacaagaaaaagaacttcatgctgtctatgtcggaaagtcgcggcgacaatacctcgtgaac |
309 |
Q |
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| T |
7936936 |
caacaatagctctatctcttcctcctccaagc------aacaagaacaagagcttcatgctgtctatgtcggaaagtcgcggcgacaataccttgtgaac |
7936843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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