View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5243_low_13 (Length: 306)
Name: NF5243_low_13
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_13 |
 | |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 9231266 - 9230991
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9231266 |
atatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagt |
9231167 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9231166 |
cctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatac |
9231067 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagtcaccatt |
289 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9231066 |
gtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccatt |
9230991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 18351322 - 18351597
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
18351322 |
atatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagt |
18351421 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18351422 |
cctaaatttctacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatac |
18351521 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagtcaccatt |
289 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
18351522 |
gtgagattttgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccatt |
18351597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 16902662 - 16902904
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
16902662 |
atatataatacaattgttacttacccggacaggacatgaatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagt |
16902761 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16902762 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
16902861 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgt |
256 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16902862 |
gtgagatttcgtgtaagtgtcgacacaattttcttgtgcacgt |
16902904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 40808136 - 40808404
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
40808136 |
atatataatacaattgttacttatccggacaggacatgaatatctaaatttaatatttttagatactcttttagacctattggcgatactacgtaggagt |
40808235 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40808236 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctacaa |
40808335 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40808336 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagt |
40808404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 2914748 - 2915022
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2914748 |
atatataatacaattgttacttacccggacaagacatgaatatctaaatttaatattgttagatacttttttagacctattggcaatactacgtgggagt |
2914847 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2914848 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcggaaaaaattgtgtctttcaccacggaatcctataa |
2914947 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagtcaccat |
288 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2914948 |
gtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccat |
2915022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 7999705 - 7999430
Alignment:
| Q |
14 |
atatataatacaattgttacttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7999705 |
atatataatacaattgttacttacccggacaggacataaatatctaaatttaatatttttagatacttttttagacctattgacgatactacgtaggagt |
7999606 |
T |
|
| Q |
114 |
cctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataa |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7999605 |
cctaaatttcaacaatttgtgtccatttttcatgatattagagatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacagaatcctataa |
7999506 |
T |
|
| Q |
214 |
gtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagtcaccatt |
289 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7999505 |
gtgagattttgagtaagtgtttacataattttcttgagcatgtgtgcgaagatattttgaaaaatgagtcaccatt |
7999430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 30242150 - 30242372
Alignment:
| Q |
56 |
tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
30242150 |
tctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagg |
30242248 |
T |
|
| Q |
156 |
gatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg |
255 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30242249 |
gatgaatccaagcgaattctttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg |
30242348 |
T |
|
| Q |
256 |
tgtgcgaagatattttagaaaatg |
279 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
30242349 |
tgtgcgaatatattttggaaaatg |
30242372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 1761 - 1953
Alignment:
| Q |
56 |
tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg |
155 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| ||||||| |||| |||| || ||||||||||||||||||||||||||| | |
|
|
| T |
1761 |
tctaaatttgatatttttagatactttttcagacctattgccgatactaagtagcagtc---------aaaaatttgtatccatttttcatgatattatg |
1851 |
T |
|
| Q |
156 |
gatggatccaa---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttc |
246 |
Q |
| |
|
||||||| | ||||||||||| | |||||||||||||| ||| | |||||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1852 |
catggatcagatatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgataagtgagatttcgagtaagtgtttacataattttc |
1951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
| Q |
110 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10627118 |
gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc |
10627065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
| Q |
127 |
aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt |
194 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||||||| |
|
|
| T |
2612139 |
aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt |
2612073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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