View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_16 (Length: 271)
Name: NF5243_low_16
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 3427393 - 3427158
Alignment:
| Q |
22 |
tgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcat |
121 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3427393 |
tgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggtttccctaatcttgatcttcaagttcat |
3427294 |
T |
|
| Q |
122 |
agttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
221 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427293 |
aattcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
3427194 |
T |
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| Q |
222 |
ggaactatgacgctcctaatggcatgcaatttccct |
257 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
3427193 |
ggaactatgacgctccaaatggcatgcaatttccct |
3427158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 3433584 - 3433349
Alignment:
| Q |
22 |
tgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcat |
121 |
Q |
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||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
3433584 |
tgatccacgtaatttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggttttcctaatcttgatcttcaagttcat |
3433485 |
T |
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| Q |
122 |
agttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433484 |
agttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
3433385 |
T |
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| Q |
222 |
ggaactatgacgctcctaatggcatgcaatttccct |
257 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3433384 |
ggaactatgacgctcctaatggcatgcaatttccct |
3433349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 11912216 - 11912451
Alignment:
| Q |
22 |
tgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11912216 |
tgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcat |
11912315 |
T |
|
| Q |
122 |
agttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
221 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
11912316 |
aactcttggctcttttttccttttcatagatggtacctttatttccatgagagaatcttgggtagtttgatcaatgatccagcctttgctttaccatttt |
11912415 |
T |
|
| Q |
222 |
ggaactatgacgctcctaatggcatgcaatttccct |
257 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
11912416 |
ggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 11896883 - 11897118
Alignment:
| Q |
22 |
tgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcat |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11896883 |
tgatccacgtagtttcatgcaacaagcaaacgtccactgtgcttattgtgatggtgcatattcccaagttggcttccctaaccttgatcttcaagttcat |
11896982 |
T |
|
| Q |
122 |
agttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccatttt |
221 |
Q |
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| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11896983 |
ggctcttggctcttttttccttttcataggtggtacctttatttctatgaaaggatcttaggtagcttgatcaatgatccaacctttgctttaccatttt |
11897082 |
T |
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| Q |
222 |
ggaactatgacgctcctaatggcatgcaatttccct |
257 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
11897083 |
ggaactatgacgctcctaatggcatgcgatttccct |
11897118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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