View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_17 (Length: 264)
Name: NF5243_low_17
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_17 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 431738 - 431992
Alignment:
| Q |
1 |
tgctgaagaggaaatgggagagttgaatgtaatgacttggaattggacgatgatagatatacacatttatactctatgattttgagatttgagta-tgtc |
99 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
431738 |
tgctgaagatgaaatgggagagttgaatgtaatgacttggaattggacgatgatagatatacacatttatactctatgattttgagatttgagtaatgtc |
431837 |
T |
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| Q |
100 |
aagcaatcagctgttaataaatgttctgcatacactcctccctccatattctccttccatcgacttttcttgtgaacttctatgatgttgcttactgagg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
431838 |
aagcaatcagctgttaataaatgttctgcatacactcctccctccatattctccttccatcgacttttcttgtgaacttctatgatgttgcttactgagg |
431937 |
T |
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| Q |
200 |
tgatgttattttgtttcattggctgggaaataggtaaaagtatgtgacatctgtg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
431938 |
tgatgttattttgtttcattggctgggaaataggtaaaagtatgtgacatctgtg |
431992 |
T |
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