View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_20 (Length: 250)
Name: NF5243_low_20
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 15282022 - 15282259
Alignment:
| Q |
14 |
tactaagaataattcaaacaatgagaaagtctctcaagaaagagaagggaaaaaacaaagatattatttagtatacagtttcatgaaaggaatgtttttc |
113 |
Q |
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| T |
15282022 |
tactaagaataattcaaacaatgagaaagtctctcaagaaagagaagggaaaaaacaaagatattatttagtatacagtttcatgaaaggaatgtcttgc |
15282121 |
T |
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| Q |
114 |
tattttagatttttgtcatgttaattaccaatgaccaaagaggaacatggcaatagagttgacttagtctttgtctacacaagatattatactttcttat |
213 |
Q |
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| T |
15282122 |
tattttagatttctgtcatattaattaccaatgaccaaagagtaacatggcaatagagttgacttagtctttgtctacacaagatattatattttcttat |
15282221 |
T |
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| Q |
214 |
aaaacaattatacctcatacctaaca-tttgaaccatt |
250 |
Q |
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| T |
15282222 |
aaaacaattatacctcatacctaacattttgaaccatt |
15282259 |
T |
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