View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_21 (Length: 245)
Name: NF5243_low_21
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3433307 - 3433072
Alignment:
| Q |
1 |
cgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaacc |
100 |
Q |
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| T |
3433307 |
cgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaacc |
3433208 |
T |
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| Q |
101 |
ttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctgg |
200 |
Q |
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| T |
3433207 |
ttactataatgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctgg |
3433108 |
T |
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| Q |
201 |
atccgtagagattgttccacataatatagttcatct |
236 |
Q |
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| T |
3433107 |
atccgtagagattgttccacataatatagttcatct |
3433072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3427116 - 3426904
Alignment:
| Q |
1 |
cgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaacc |
100 |
Q |
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| T |
3427116 |
cgaaatgcaaatcatcaacctccaacactcatagacttaaactatga------cggtga---cgatgaaaatgatgaaaatgaaagaatctccacaaacc |
3427026 |
T |
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| Q |
101 |
ttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctgg |
200 |
Q |
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| T |
3427025 |
ttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgccggtgatcaacccgatccaggtgctgg |
3426926 |
T |
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| Q |
201 |
atccgtagagattgttccacat |
222 |
Q |
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| T |
3426925 |
atccatagagaatgttccacat |
3426904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11897160 - 11897390
Alignment:
| Q |
1 |
cgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgatgaaaatgaaaggatctccacaaacc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||| | |||||||| || ||||||| | | ||| |||||||| |
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| T |
11897160 |
cgaaatgcaaaacatcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggtgaaaataacataatccacacaaacc |
11897259 |
T |
|
| Q |
101 |
ttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctggagatgcaccggatcccggtgctgg |
200 |
Q |
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| T |
11897260 |
ttactataatgtatagacaggttgtgtctagaggaaaaaactcaagacttttcctcggatacccttaccgtgctggaggtgtaccgaa---atgtgctgg |
11897356 |
T |
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| Q |
201 |
atccgtagagattgttccacataatatagttcat |
234 |
Q |
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| T |
11897357 |
atccgtagagattgttcctcataatacagttcat |
11897390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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