View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5243_low_24 (Length: 240)
Name: NF5243_low_24
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_24 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 18037188 - 18037409
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18037188 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacagt |
18037287 |
T |
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| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18037288 |
gagttgtttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
18037387 |
T |
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| Q |
219 |
ttcatgtgacaagattttcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
18037388 |
ttcatgtgacaagattttcatt |
18037409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 53465939 - 53465718
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
53465939 |
acacctatgttcaataattatcccttcttctctgcaagtattttctttccaaaacatcaatattctgcatcttatgaagatggttggacttctatacagt |
53465840 |
T |
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| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53465839 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
53465740 |
T |
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| Q |
219 |
ttcatgtgacaagattttcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
53465739 |
ttcatgtgacaagattttcatt |
53465718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 31326906 - 31326689
Alignment:
| Q |
19 |
acacctatgttcaataattatcccttcttctctgcaagtattttatttccaaaacatctatattttgcatcttatgaagatggttggacttctttacggt |
118 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
31326906 |
acacctatgttgaataattatcccttcttct----aagtattttctttccaaaacatcaatattctgcatcttatgaagatggttggacttctatacagt |
31326811 |
T |
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| Q |
119 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31326810 |
gagttgcttcccacaaaaccaatgacaataattatagagaaagagaaccatggtccacgattgtaagttaatatggaatagttgcagatgctttgctttg |
31326711 |
T |
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| Q |
219 |
ttcatgtgacaagattttcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
31326710 |
ttcatgtgacaagattttcatt |
31326689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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