View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5243_low_27 (Length: 238)
Name: NF5243_low_27
Description: NF5243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5243_low_27 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 879981 - 880190
Alignment:
| Q |
13 |
aagaatatgacattttaatttttccatttcttttgatgctcataaacatttagttctatttaaatgaaacaaaagaataaatgcttttcaactcctactc |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
879981 |
aagaaaatgacattttaatttttccatttcttttgatgctcataaacatttagttctatttaaatgaaacaaaagaataaatgcttttcaactcctactc |
880080 |
T |
|
| Q |
113 |
aagggctagaagcataaaaacagctccacaggagtcttgcatatttgattttctcgaatcataatatgtgaatacttaactccatatttttaaagtttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880081 |
aagggctagaagcataaaaacagctccacaggagtcttgcatatttgattttctcgaatcataatatgtgaatacttaactccatatttttaaagtttta |
880180 |
T |
|
| Q |
213 |
aggtactatt |
222 |
Q |
| |
|
|||||||||| |
|
|
| T |
880181 |
aggtactatt |
880190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 849165 - 849268
Alignment:
| Q |
13 |
aagaatatgacattttaatttttccatttcttttgatgctcataaacatttagttctatttaaatgaaacaaaagaataaatgcttttcaactcctactc |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
849165 |
aagaaaatgacattttaatttttccatttcttttgatgctcataaacatttagttctatttaaatgaaacaaaagaataaatgcttttcaactcctacta |
849264 |
T |
|
| Q |
113 |
aagg |
116 |
Q |
| |
|
|||| |
|
|
| T |
849265 |
aagg |
849268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 849294 - 849399
Alignment:
| Q |
114 |
agggctagaagcataaaaacagctccacaggagtcttgcatatttgattttctcgaatcataatatgtgaatacttaactccatatttttaaagttttaa |
213 |
Q |
| |
|
||||| ||||||||||||| ||||||| | ||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
849294 |
agggccagaagcataaaaatagctccataagagtcttgcatatttgattttgtcaaattataatatgtgaatacttaacttcatatttttaaaattttaa |
849393 |
T |
|
| Q |
214 |
ggtact |
219 |
Q |
| |
|
|||||| |
|
|
| T |
849394 |
ggtact |
849399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 235489 - 235549
Alignment:
| Q |
57 |
aacatttagttctatttaaatgaaacaaaagaataaatgc-ttttcaactcctactcaagg |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||| |
|
|
| T |
235489 |
aacatttagttctatttaaatgaaataaaagaataaatgctttttcacctcctattcaagg |
235549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University